Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01022 ATGATGGGGTCTGAGACTTCAGCCACTGTTGTTGAAAAGCTTAACAATTCACAAGATTTATCAAGAAAAAGGTCTTGTTCTAATAAACAGAAACAAGAGAAAATCCCTAAGAGAATTCGCAAGGCTGAAAGAGAGAAAGAGAAGCGTGAACAGTTGAATGAACTCTTTCTTGCTCTTGCTCATACACTCGAGGTAACAGATCTTAAAGAACAGAACAATGGAAAAGCTTCTATATTGAGGGAATCCATCAGACTGCTGAAAGACTTGTTCAGTCAGATCGAGTCCTTGAAAAAGGACAGTGCATCTCTCTTGTCAGAGACTCACTATGTGACTATGGAAAAAAATGAGATGATGGAGGAGAATTGTGTTCTGAAAAGTCAAATTGAGAAACTTGGTGGTGAAATAGAAGCAAGAGTAGTCCAATGTGGACATAACCTCATGAATCCATTTTTACAACGAGAAAAGATTACAGAGGAGAATCTGCAATTGTCCAGCACAGAAGAAGCAGTGCAGCAAGGACACGCAGTTTTGGTTGTCCCCGTAAGCACTCATCATGGCCCTTATAATGTTGTTGAGCAGATTTCAAAACCCAAATCCACTATTACTAAACCACATCCCAGGTATCCTACTCCAATGGATTCATGGCCACTGCAATTGCTTGCAGAGCAACCAACTTCAAATTAA 684 0.4006 MMGSETSATVVEKLNNSQDLSRKRSCSNKQKQEKIPKRIRKAEREKEKREQLNELFLALAHTLEVTDLKEQNNGKASILRESIRLLKDLFSQIESLKKDSASLLSETHYVTMEKNEMMEENCVLKSQIEKLGGEIEARVVQCGHNLMNPFLQREKITEENLQLSSTEEAVQQGHAVLVVPVSTHHGPYNVVEQISKPKSTITKPHPRYPTPMDSWPLQLLAEQPTSN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01022 227 Pfam Helix-loop-helix DNA-binding domain 37 89 IPR011598 GO:0046983
Vimu10g01022 227 MobiDBLite consensus disorder prediction 24 46 - -
Vimu10g01022 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 37 114 IPR036638 GO:0046983
Vimu10g01022 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 89 IPR011598 GO:0046983
Vimu10g01022 227 MobiDBLite consensus disorder prediction 1 23 - -
Vimu10g01022 227 PANTHER TRANSCRIPTION FACTOR BHLH47 2 226 - -
Vimu10g01022 227 Coils Coil 79 106 - -
Vimu10g01022 227 Gene3D - 32 116 IPR036638 GO:0046983
Vimu10g01022 227 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01022 Vimu-Chr10 9422823 9424554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01022 2 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 40.323 4.14e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01022 - - gmx:100809240 203.371