Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01016 ATGGAAGAAGATGAAGATGGAAGATCTAGTTTCAGGTTGCAAGAGCAAGCAGAGGATAGCAGCGGTAGGGAAAACGGCAACGCGGTAGAAGACAAAAGCCATGGTTCACATGGAAAGACGTTCAAGAAGCCGCGTCGTCCGTACGAGAAGGAGCGTCTGGACGCGGAGCTGAAGCTGGTCGGAGAATATGGGCTGCGGTGCAAGAGGGAGCTGTGGAGGGTGCAGTACGCCCTCAGCCGCATCCGCAACAACGCTCGTAACCTCCTCACTCTTGACGAGAAGAACCCGCGCCGGATCTTTGAGGGGGAGGCTCTCCTCCGCCGCATGTTCCGCTACGGTCTCCTGGACGAGACCCAGAACAAACTCGATTACGTCCTCGCACTCACTGTCGAGAACTTCCTCGAGCGCCGCCTCCAAACCCTCGTCTTCAAGTCCGGCATGGCCAAGTCCATCCACCATGCTAGGGTTCTCATCAAGCAGAGACACATCAGGGTTGGTAGGCAAGTGGTGAACATCCCATCTTTCTTGGTGAGGGTTGACTCACAGAAGCACATTGACTTTTCACTTACAAGTCCCCTGGGTGGAGGACGCCCTGGAAGAGTGAAAAGAAGGAACCAAAGAGCTGCTGCTAAGAAAGCCGCAGGTGGAGATGGAGATGAGGAAGATGAGGATTAG 675 0.5481 MEEDEDGRSSFRLQEQAEDSSGRENGNAVEDKSHGSHGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARNLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIKQRHIRVGRQVVNIPSFLVRVDSQKHIDFSLTSPLGGGRPGRVKRRNQRAAAKKAAGGDGDEEDED 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01016 224 Gene3D - 135 191 IPR036986 GO:0003723
Vimu10g01016 224 MobiDBLite consensus disorder prediction 1 47 - -
Vimu10g01016 224 CDD S4 136 180 - -
Vimu10g01016 224 NCBIfam 30S ribosomal protein S4 38 193 IPR005710 GO:0003735|GO:0006412|GO:0015935
Vimu10g01016 224 SUPERFAMILY Alpha-L RNA-binding motif 39 185 - -
Vimu10g01016 224 ProSiteProfiles S4 RNA-binding domain profile. 136 210 - -
Vimu10g01016 224 ProSitePatterns Ribosomal protein S4 signature. 134 158 IPR018079 GO:0019843
Vimu10g01016 224 MobiDBLite consensus disorder prediction 190 224 - -
Vimu10g01016 224 FunFam 40S ribosomal protein S9 135 215 - -
Vimu10g01016 224 SMART s4_6 136 207 IPR002942 GO:0003723
Vimu10g01016 224 Pfam Ribosomal protein S4/S9 N-terminal domain 37 135 IPR001912 GO:0019843
Vimu10g01016 224 SMART Ribosomal_S4_2 32 135 IPR001912 GO:0019843
Vimu10g01016 224 PANTHER 30S 40S RIBOSOMAL PROTEIN 39 210 IPR022801 GO:0003735|GO:0015935|GO:0019843
Vimu10g01016 224 Pfam S4 domain 136 179 IPR002942 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01016 Vimu-Chr10 9384317 9386187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01016 29 214 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 88.172 1.62e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01016 K02997 - gmx:100810569 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00782 7 7792706 7793849 Vimu10g01016 10 9384317 9386187 ECH
Vimu10g01016 10 9384317 9386187 Vimu10g01016 10 9384317 9386187 ECH