LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g01015	ATGGATTCTCTGAAAATGTTCAAAGGTTACGGCAAAATAGAACGCGATCAGCACGGAATCGAAGATCCGCAACCAAACCTTAAATCCCAAATCTCAAAACCCGTAATCTCCACAACAATTTCCGTCTTCGCAATCCTTTCCCTCACTCTAACTCTCGCCTTCGCTATCGCATCCATTGCGCACCACCAAGCCACTGAGTCACAACAGCTTTCCAACTCGGCCGAGTCCATCCGATTTGTCTGCAACGTTACGCGCTTCCCCGCCGCGTGCCTCGCTGCCATCCCGCCTTCCGCTAACGCCACCGATCCCCTCCAGAGCCTCGCGTCCTCGCTCCGCGCAACGAAGGGAGGTGCACTCGCCGACTGCAAGGACCAGTTCGACGACGCGCTGAGTCGACTCAACGACTCGCTGTCGGCCGCAGCGGCGTTGACCGACAAAGCAGTGAGCGACGTGCATACGTGGGTGAGCGCGGCGGTGACGGACCAGCAGACATGCTTGGACGGACTGGAAGAGGCCGGTGACGCGGCGGGCCTTGAGAAGATGAAGAAAATGATGACGAGGTCCGAGGAGTATATGAGTAACAGTTTGGCTATTGTTGCTAATATTCGCGATTTGTTTAGCCATTTCAACATGAAACTCCATTGA	645	0.5488	MDSLKMFKGYGKIERDQHGIEDPQPNLKSQISKPVISTTISVFAILSLTLTLAFAIASIAHHQATESQQLSNSAESIRFVCNVTRFPAACLAAIPPSANATDPLQSLASSLRATKGGALADCKDQFDDALSRLNDSLSAAAALTDKAVSDVHTWVSAAVTDQQTCLDGLEEAGDAAGLEKMKKMMTRSEEYMSNSLAIVANIRDLFSHFNMKLH	214

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g01015	214	CDD	PMEI-like_3	80	202	-	-
	Vimu10g01015	214	PANTHER	PECTINESTERASE	50	200	-	-
	Vimu10g01015	214	FunFam	Pectinesterase	104	203	-	-
	Vimu10g01015	214	NCBIfam	pectinesterase inhibitor domain	115	201	IPR006501	GO:0004857
	Vimu10g01015	214	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	76	202	IPR035513	-
	Vimu10g01015	214	Gene3D	Invertase/pectin methylesterase inhibitor family protein	70	203	IPR035513	-
	Vimu10g01015	214	SMART	PMEI_2	72	198	IPR006501	GO:0004857
	Vimu10g01015	214	Pfam	Plant invertase/pectin methylesterase inhibitor	80	198	IPR006501	GO:0004857

Showing 1 to 8 of 8 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g01015	Vimu-Chr10	9375706	9376392	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g01015	1	214	Carbohydrate Esterase	AT1G53840	31.250	4.31e-25	100

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g01015	-		-	gmx:100789567	268.855

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