Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01006 ATGGCAAACGAACCTGCGAGCTTCTGGACTCAGGCAAACGCTCTCCTTAGAAAGAATTTAACGTTTCAGAAGCGAAATGTTAAAACAAACGTTCGGCTCATCATGTTCCCGTTCCTGCTGTGTCTGTTGCTGCTTCTCCTTCAACGCCTGGTGGATTCTCAATTGGACAAGGCAGAGAACAAGTGTGGGTGCGAGTGTGTGAGGAGAGAAGGGGACACGTGTGTGGAGGAGGAGTGCGGGATTCAGCATTCGGATTTGGACCAAGTAACAACCTGCGCCATTCCAAATCCTCCGGAATGGCCTCCTCTGTTGCAGGTGCCGGCTCCCCAGTACCGAGCTGTGAGAACGGACAATTTTCCATTTTCCGATTATCCAAACGCCTCCTGCAGGAGGAATGGCTCCTGCCCTGTCACTATGCTCTTCACTGGGACAAATCAGTCTTTTGGAGAAATTATATCTGGGAATATGATCCCAAGTTCCTTCACTGCTATAAACAGCTCTTCTGTTATGGCTAGTTTGGCAGCAAATGTCTCTGGATCAGCCTCCAATACAGAAAACACCAATTTTCTGGAACCTGCTTTCTTTTCGGATCAACCTATTTATTATCTTCAAAGTCAGTGCACGCAGAACTCTACATTTTCCATTTCTTTTGAGCTATCCGCAGCAATTAGCAGAGAACAAGAGTTAGTATGCGCCGAGGGCTTACCTTTATGGCGTAATAGTGCTTCTGAAGTGAACAATGAGCTATATAGAGGTTATCGGAAAAGTAACCTAGAGGAACAAATCCAAGAGATAGCTGCAGGTTATGATTTTTTGAATTCAAATGGGAGAGTGTTTAATGTCAGCATATGGTACAACTCCACCTACAAAAACGACACTGGTTCTACTGAAATTGCATTGGCGCGTATTCCTCGTTCTGTTAATTTGGTATCAGACGCCTATCTGCAGTTTCTGTTGGGACCTGGTACCAAAATGTTTTTTGAGTTTGTAAAGGAAATGCCAAAACCTTCAACCCCAATTAAATTTGATTTGGCTTCTCTTTTGGGTGGTCTGTTCTTTACATGGGTTATCCTGCAACTTTTCCCTATTGCCTTGACATCGCTTGTATATGAGAAGCAACAAAGATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCGTATGGTTATTTTCTGGCCTTATCAATTGTCTACATGCTGTGTTTTGTGATATTTGGCTCACTCATAGGGTTGAATTTCTTCACAATGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAATTTACAAATTGCACTGGCTTTTTTATTGGCTTCCGTGTTTTCAAATGTTAAAACTGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGCTATTAGCTGGCTTTCTTTTCCAATTTTTTGTTCAAGACACATCATTTCCAAGAGGGTGGATCATTGTTATGGAGCTGTATCCTGGGTTTGCTTTATATCGTGGGCTATATGAGTTTTCGCAATATTCGTTTAATGGTGATGCTTTGGGGACTGATGGTATGCGCTGGGGCGATCTGAGCGATAGCGAAAATGGCATGAAGGAGGTCTTAATTATAATGTTTGTGGAGTGGATTTTGGTGCTTTCCTTTGCCTATTATATCGATCAAGTTTTGTCAACAGGAAGCAGAAAAAGTCCTCTTTTTTTCTTTAAAAGATTTCAGAAAAAGCCTCATTCATCTTTTCGGAAGCCTAGTATCCGAAGGCAGAAATCCAAGGTTTTTGTTCAGATGGAGAAACCTGATGTCACTCAAGAGGTCTACCCGGGGAGAGATGGTAACCCTGAGAAACTTGCGGTGAGAGGGTTGTCCCTTGCTTTGCCTCAAGGAGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTCACGAAGCCAACCTCTGGTACAGCATTTGTTCAAGGTCTTGACATAATAACTCATATGGATGGAATATATACTAGCATGGGTGTATGCCCACAACATGATTTGCTTTGGGAATCCCTGACAGGAAGAGAGCATCTACTCTTTTATGGCAGACTTAAAAATCTTAAAGGTTCAGCCTTGACAGAAGCAGTGGAAGAATCGTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCAGATAAAAAAGCTGGAAAGTACAGCGGAGGAATGAAAAGGAGGCTTAGTGTCGCAATTTCATTGATTGGAGATCCTAAGGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTCAAGCGTGCAAAACAAGATCGTGCAATCATTCTTACCACACATTCAATGGAAGAGGCAGAGGTCCTATGCGATCGATTAGGAATATTTGTAGATGGAAGCTTGCAGTGCATAGGAAACCCAAAGGAGTTGAAAGGTAGGTATGGAGGAACATACGTGTTCACAATGACAACATCAGTGGATGATGAAAAGGATGTAGAGAATTTGGTGCGAAAGCTTTCCCGAAATGCTAACAAGATCTACCATATCTCTGGTACACAAAAGTTTGAGCTACCAAAAGGAGAGGTTAAAATAGCAGATGTATTCAAAGCAGTTGAAGCTGCAAAAAGAAGCTTCAGCGTTTCAGCATGGGGTTTAGCTGACACTACATTGGAAGATGTCTTCATCAAAGTTGCACGTGGGGCTCAGCCATTTGACACCTTGTCATAG 2769 0.42 MANEPASFWTQANALLRKNLTFQKRNVKTNVRLIMFPFLLCLLLLLLQRLVDSQLDKAENKCGCECVRREGDTCVEEECGIQHSDLDQVTTCAIPNPPEWPPLLQVPAPQYRAVRTDNFPFSDYPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSSFTAINSSSVMASLAANVSGSASNTENTNFLEPAFFSDQPIYYLQSQCTQNSTFSISFELSAAISREQELVCAEGLPLWRNSASEVNNELYRGYRKSNLEEQIQEIAAGYDFLNSNGRVFNVSIWYNSTYKNDTGSTEIALARIPRSVNLVSDAYLQFLLGPGTKMFFEFVKEMPKPSTPIKFDLASLLGGLFFTWVILQLFPIALTSLVYEKQQRLRIMMKMHGLGDGPYWMISYGYFLALSIVYMLCFVIFGSLIGLNFFTMNDYSIQFVFYFIYINLQIALAFLLASVFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQYSFNGDALGTDGMRWGDLSDSENGMKEVLIIMFVEWILVLSFAYYIDQVLSTGSRKSPLFFFKRFQKKPHSSFRKPSIRRQKSKVFVQMEKPDVTQEVYPGRDGNPEKLAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIITHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTEAVEESLKSVNLFYGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGSLQCIGNPKELKGRYGGTYVFTMTTSVDDEKDVENLVRKLSRNANKIYHISGTQKFELPKGEVKIADVFKAVEAAKRSFSVSAWGLADTTLEDVFIKVARGAQPFDTLS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01006 922 ProSitePatterns ABC transporters family signature. 739 753 IPR017871 GO:0005524|GO:0016887
Vimu10g01006 922 Pfam ABC-2 family transporter protein 196 554 IPR013525 GO:0016020|GO:0140359
Vimu10g01006 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 832 IPR027417 -
Vimu10g01006 922 Coils Coil 255 275 - -
Vimu10g01006 922 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 606 916 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vimu10g01006 922 Pfam ABC transporter 622 766 IPR003439 GO:0005524
Vimu10g01006 922 FunFam ABC transporter A family member 7 590 865 - -
Vimu10g01006 922 Gene3D - 605 894 IPR027417 -
Vimu10g01006 922 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 837 IPR003439 GO:0005524
Vimu10g01006 922 CDD ABC_subfamily_A 614 825 - -
Vimu10g01006 922 SMART AAA_5 630 813 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01006 Vimu-Chr10 9237614 9245610 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01006 584 829 Calmodulin-binding Proteins AT2G36910 22.932 1.72e-11 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g01006 10 9237614 9245610 Vimu10g01006 10 9237614 9245610 ECH