Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01004 ATGACTTGTCCAGGGGCGCTTCATTTTTCGCAGCTAAACGACACCGTTATAAGCTACGGTCTTCAGACCAACTCCACCAGTCTTCAGTGGCGAGGCAAATATCAGGACCCTACTATGTCGTTTCAACTTCCTCTTCAGCTTGCCGCCGAGAGGGAAATTGCCAGACACCTCATTGGAGACTCGGGTTTCAGTTGGAATGTGTTTCTGAGGGAATTCGCTCACCCTTCCTCGACTCCTTTCTCTGCCGTGGGTTCAATTGGTCCCGCGTTTTTCCTCGCCATTGCTATGTTTAATTTTGTTCTTCAGATAAGCTCTTTGTCAATGACAATGATGGGCCTTTACGACTTTGCTTACTGGTCGTCCTGGCTCATTTGGGAGACGGTTGTCACAATCCTATCTTCCCTCCTCATAGTACTCTTTGGAATGATGTTCCAGTTCAGTTTTTTCTTGAAAAACAGTTTCGCGGTCCTGTTTATCTTTTTCTTCCTATTTGAACTTAATATGACTGGCTTGGCCTTCATGTTGTCTGCTTTCATTAAGAAGTCATCTTCGGCAACAACAATGGGATTCTCTATATTTATTGTTGGCTTTTTGACTCAGCTTGTGGTACAGGCAGGATTTCCTTACACGGATAATTTCTCCAAAACTTTACGAGATTTGTGGTCGTTATTCCCACCCAATCCTTTTTCTCAAGGTATACAAGTGCTTTCAGATGCAGTTGCAACTTCCGAAGACGATGGTGTTAGCTGGAGTAGACGAGGAGAATGCCTTCATACTCAAGCAGACTGTGTGATAACTATTGATGATATTTATAAATGGCTTGCGGGTACATTCGTTCTCTGGTTTGTTCTGGCCATTTATTTTGACAATATAATCCCTAATGCATCGGGTGTGAGGAAGTCAATATTCTACTTTCTAAATCCCAATTATTGGATTGGAAGGGGTCAGAGAGTGAAAGAGGGTGGGCTTTGTAGTTGTGTAGGTTCAAACCCACGTCAGGAAATAAGTACACCTGATGATGAAGATGTCCTTGATGAAGAAAGCAAAGTGAAACAGCAACTAACAGAAGGTCTGGTTGATGCAAATATTGCTGTTCAAATACATGGCCTTGTGAAGACCTATGCCGGTACACGTAACATTGGTTGCTGCTGCAAATGTACAAAGACTGCTCCTTACACTGCTGTTAAGTTTGATATACTATGGGATGCACTGTCTGGCCAAGAACATCTCCAACTCTTTGCTACTATTAAAGGCCTGTCCCCCGCTTCCATAAAATCAATTACCCAGACTTCATTAGCAGAGGTGAAACTCACGGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAGCGCCGTCTCAGTGTTGCAATTGCGCTTATTGGTGACCCTAAGTTAGTCATTTTGGATGAACCTACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACGACTCATTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATAGGAATCATGGCAAAAGGAAGGCTTCGCTGCATTGGCACCTCAGTCAGATTGAAATCACGCTTTGGTACTGGTTTTATCGCTAATATCAGCTTCTATGGAAACAATGAACGTAGTCCTACCAATGGTGATGCATTATCTACAGAGCATCGTGAGGAAGTGAAGAAATTCTTTAAGAATTATTTAGATGTAGAGCCAAAAGAGGAGACGGATAACTTTATAACTTTTGTGATTCCCCATGACAGAGAGGCGCTCCTGACAAATTTCTTTTCAGAGCTCCAAGAGAGAGAAAAAGAATTTGGCATTTCTGACATCCAGCTTGGTCTTACAACTCTCGAAGAAGTTTTCTTGAATATTGCAAGACAAGCAGAGCTAGAAAACGCTACAGCTGAAGGGAGGCTAATAACCCTGACCTTAACATCTGGGGAATCTGTGCAGATTCCTGTAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAATCCGTGGAAAATCCAACAGGGTTTATGGTAGAAGTTTACTGGGAGCAAGATGATACTGGGACCCTATGCATTTCTGGCCACTCGCAGAAGGTTCCTATTCCTCCTGGCGTTCAATTGTCATCCTCACCTTCTGCAAGAAACCGTAGATATTTAAGCCGGGCAGGACCAATTAATGGAATTGTGATTGATCCAAGTCAAGTTAGTCCAGGTGATTTTCAGCGATAA 2250 0.432 MTCPGALHFSQLNDTVISYGLQTNSTSLQWRGKYQDPTMSFQLPLQLAAEREIARHLIGDSGFSWNVFLREFAHPSSTPFSAVGSIGPAFFLAIAMFNFVLQISSLSMTMMGLYDFAYWSSWLIWETVVTILSSLLIVLFGMMFQFSFFLKNSFAVLFIFFFLFELNMTGLAFMLSAFIKKSSSATTMGFSIFIVGFLTQLVVQAGFPYTDNFSKTLRDLWSLFPPNPFSQGIQVLSDAVATSEDDGVSWSRRGECLHTQADCVITIDDIYKWLAGTFVLWFVLAIYFDNIIPNASGVRKSIFYFLNPNYWIGRGQRVKEGGLCSCVGSNPRQEISTPDDEDVLDEESKVKQQLTEGLVDANIAVQIHGLVKTYAGTRNIGCCCKCTKTAPYTAVKFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVKLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSVRLKSRFGTGFIANISFYGNNERSPTNGDALSTEHREEVKKFFKNYLDVEPKEETDNFITFVIPHDREALLTNFFSELQEREKEFGISDIQLGLTTLEEVFLNIARQAELENATAEGRLITLTLTSGESVQIPVGARFVGIPGTESVENPTGFMVEVYWEQDDTGTLCISGHSQKVPIPPGVQLSSSPSARNRRYLSRAGPINGIVIDPSQVSPGDFQR 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01004 749 ProSitePatterns ABC transporters family signature. 448 462 IPR017871 GO:0005524|GO:0016887
Vimu10g01004 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 528 IPR027417 -
Vimu10g01004 749 Pfam AAA domain, putative AbiEii toxin, Type IV TA system 434 507 IPR003959 GO:0005524|GO:0016887
Vimu10g01004 749 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 396 641 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vimu10g01004 749 Pfam ABC-2 family transporter protein 87 287 IPR013525 GO:0016020|GO:0140359
Vimu10g01004 749 CDD ABC_subfamily_A 397 534 - -
Vimu10g01004 749 Gene3D - 385 551 IPR027417 -
Vimu10g01004 749 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 286 546 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01004 Vimu-Chr10 9223907 9229239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01004 435 545 Calmodulin-binding Proteins AT2G36910 26.087 7.47e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01004 - - gmx:100786538 1167.14