Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01003 ATGGGAAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCATCCAGATCAAATATGTCAAAGGGAAGAGAGGTAAAGCAATTAATTGTTAATAAAAGAGAAGCAGTGGTTACTTCCAACGTGTTGGAGAACGGTTTGGACTTAGATCCAAACCACATCGAGATTGCTACAAACGAGGAGGACCTTGAACTAGAGAATGAAGAATCAGAAGTTATTTTACCTGAGAATCAAGAAAGAGACAGTATAGGACCTGTTGATCCAGATGCACCACCTGATCCAGAGAAAATCAGGCAGGAGGTAGCAGCAATAAAGACACAAGCTGCTTTCAGGGGTTACTTGCTAATGGAAGCATCTCTTGTGAAGGCTCGCAGGGCATTTAGGGCTCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACCTAGTTAGGAGACAAGCAGTTGTTACATTATGCTGTATGTATGGGATTGTAAAGTTTCAAGCACTTGCCCGTGGACTAAAGATTAGGAAGTCTAATGTTGGAATTGAAATCCATCAGAAGCGTGGTCTGTTTAAGCCTCTGGAGGGCAATCTTGGTGAGCCGGTTGGTATTTCCACAAAAATTTCAAAGTTGTCTGCAAATACTTTCATCCGTAAGCTTCTTGCTTCATCAATTACAATAATGGCCCTGCGCTTGCAATATGTTAGTGGAGATCCAAATTCAGTGTTAAGCTGGTTGGAGCGCTGGTCATTATCTTGCTTTTGGAAACCAGTTTCCCAACCTAAGAAAATTCGAGACTTAAAATCTCAGAGAAAGCAGGGTAATATTTCAAATGGAGAAGTTCAAATTTCCAAGTCAAGACGCACTAACAGGAAGCTTCCTGTTGCTAGTTTTGAACCAGTCCCAGTGCAAACAAATCCTGAATTTGAGAAACCTAAACGTAATTTCAAGAAAACACCATACCAGGTGTCAGATCCAGAGCAAGACAATCCACAAAGTGAGCTTGAAAAGGTTAAACGCAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAGTGCTGTTCAGCCAGAAGTTGAGTCTGAGACTCTAAAGCAGCATTTGGAAATCACAACAGTCATTCCAGGTAATAATGGTTCAGAACAAGTGATCATTACTTCTGAGGAAAAGCTCAAGAAGGAAGAAACTTTGACTATCTCTGATGTGCCTGATATCGAAATTACTCCAAGACCATTGGTTAACAAGGAAGTGTCTGACATTCCAAATAATTATCAAGTGTCTGTAGAATCTGAACCCTTGTCAGAGACCACTACTAAAGATAGAAACACTTCTCGTGATGAAGTTCAAAATGGGCTAGGCAATCTACCAGAGGCTATTTTTAAAGAAGACAACTCCCTATTAACAAATGGAGATTTGAGTCATAAAGATCTGACAGGTAATGAAAACCAGAAACCTACCCGTAAAGCATCAAATTTGACGAAACAGGAGAATGGGGAAGATGGCTTAAAGAATAGTCCAAAAGTACCAAGTTATATGGCAGCAACTGAGTCCGCCAAGGCAAAGTTGAGGGCACTAGGGTCAGGGTCCCCAAGGTTTGGAGAAGATGGAACTGAGAAAAACAACACTACTGGTTCTGGGAGGCATTCTCTGCCATCTTCAACTGGCAACAAGATTAGTTCGCAATCACCTAGGACACAGAGATCAGTGCCAGCAGGTGGCAAAGGGAGTAAAAAAAGTGACAGATCAATAGCATCTTCTAAAGGAGGGAATGGTAAAGTAATTCAGGCAGAGTGGAGGAGGTGA 1797 0.4129 MGKSPGKWIKTVLFGKKSSRSNMSKGREVKQLIVNKREAVVTSNVLENGLDLDPNHIEIATNEEDLELENEESEVILPENQERDSIGPVDPDAPPDPEKIRQEVAAIKTQAAFRGYLLMEASLVKARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKFQALARGLKIRKSNVGIEIHQKRGLFKPLEGNLGEPVGISTKISKLSANTFIRKLLASSITIMALRLQYVSGDPNSVLSWLERWSLSCFWKPVSQPKKIRDLKSQRKQGNISNGEVQISKSRRTNRKLPVASFEPVPVQTNPEFEKPKRNFKKTPYQVSDPEQDNPQSELEKVKRNLRKIHNPVVESAVQPEVESETLKQHLEITTVIPGNNGSEQVIITSEEKLKKEETLTISDVPDIEITPRPLVNKEVSDIPNNYQVSVESEPLSETTTKDRNTSRDEVQNGLGNLPEAIFKEDNSLLTNGDLSHKDLTGNENQKPTRKASNLTKQENGEDGLKNSPKVPSYMAATESAKAKLRALGSGSPRFGEDGTEKNNTTGSGRHSLPSSTGNKISSQSPRTQRSVPAGGKGSKKSDRSIASSKGGNGKVIQAEWRR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01003 598 MobiDBLite consensus disorder prediction 264 333 - -
Vimu10g01003 598 PANTHER IQ-DOMAIN 5-RELATED 1 557 - -
Vimu10g01003 598 MobiDBLite consensus disorder prediction 532 567 - -
Vimu10g01003 598 MobiDBLite consensus disorder prediction 421 453 - -
Vimu10g01003 598 MobiDBLite consensus disorder prediction 468 598 - -
Vimu10g01003 598 ProSiteProfiles IQ motif profile. 134 156 IPR000048 GO:0005515
Vimu10g01003 598 MobiDBLite consensus disorder prediction 270 290 - -
Vimu10g01003 598 ProSiteProfiles IQ motif profile. 102 128 IPR000048 GO:0005515
Vimu10g01003 598 Pfam Protein of unknown function (DUF4005) 493 577 IPR025064 -
Vimu10g01003 598 SMART iq_5 101 123 IPR000048 GO:0005515
Vimu10g01003 598 SMART iq_5 131 153 IPR000048 GO:0005515
Vimu10g01003 598 Pfam IQ calmodulin-binding motif 105 118 IPR000048 GO:0005515
Vimu10g01003 598 Pfam IQ calmodulin-binding motif 134 151 IPR000048 GO:0005515
Vimu10g01003 598 MobiDBLite consensus disorder prediction 481 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01003 Vimu-Chr10 9211260 9218586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01003 1 598 IQD Protein Family AT1G74690 42.790 1.86e-117 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01003 - - gmx:100786022 903.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00774 7 7706716 7713876 Vimu10g01003 10 9211260 9218586 ECH
Vimu7g03910 7 36639633 36645222 Vimu10g01003 10 9211260 9218586 ECH
Vimu10g01003 10 9211260 9218586 Vimu10g01003 10 9211260 9218586 ECH