Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01001 ATGGAAGAAGATCAAGAAGTGAAGCACTCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGGAGATCCTTAGGAGGTCACATGAGGTCACATGTCACCAATGTTTCATCCGAGACAGAGAAAGTTTCGTCTTTCAACAACAACAATAGTGGAGATAGAGATAGAGAGACGGGAATAATGGGTTCTGAAGGAGGAATTAGCAATGGAGGGTATGGTCTTAGAGAGAACCCGAAGAAGACTTGGAGGTTCACGAATTCCGTTGATGACACTATGTTGGTGTTGGACAAGCTGTGCAAGGAGTGTGGCAAAGGCTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCCGAGAGAGTATCCCAGAACAACAGCAGCTTGATGGAGGATCAAGATTCGTGGACAGAAAATACCAATGCTAGCCAGAAGATGGTGTCGGATGATAGCCACTCCGACAATGAAGCCACTGCTCCAAACCGTAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACGTGGCTCCATCAACTTCTTCTGTGTCATTTGTTTCTGAGGCAGAGCAGGAGCAGGAGCAGGAAGAGGTCGCCATGAGTTTGATGATGCTTAGCAGGGATGTTAGTCCTTGGTGTGGTCTCAGTTCTGTGAACTCATTTCACTTTGAATCTCCTTCTTTGGTTCCAACCAATTTAGATTCCAAGGCTGAAGGCAAGAGGGTTGTCTCCAATGATTCTGAAAATAAGGTTACCAAACCAAAGGATATGAAGTGGGATTTTGGCAATTTGGATGCTTCATATCTCAACTCCAAAGGAAAAATAAGCTCAGAACTAGACAAGAAGGCCGAGCTTGATACTGATTCTGCATTTGAGGACAATGGAATAGATGATAATAGAAATAATAAGTACACTTCAATCAAGGCAAAGTATTTGGATTGTGAATTGAAGGCAAGTTCTTCAAAGAGTTGGGTGAAGAACAAATCCCCAGAAGCTGAATTGAGCAAAAGCTCAAACAAGAGAGGAAAATTTGAGTGTGCTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTCGGAGGTCACAGAGCTAGTCACAAGAAGATCAAGGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCACTGAGTTGGAAGCAGACATCTCCCCTGATCCAACAACAGAAAGTAAGCTCCTGAAGAATGAATATGTGGAAGAACATGAAATGGTTACTGTTACTACTACTACTACTGGTTTTGACAATGAGGAAGAGAGAGAGAGAGATTTGAAAAAGGGGAAAGTTCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGGCAAGCCTTGGGTGGCCACAAGAGATCTCATCACTTGCCTAATGGGTCTGATATTGCTAGAAACTGTCAAAGTCAAAGAGTTGTACTTGGGGGAGAAGACCCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTAACAGCCATGGCCATGCTGAGCCTTACAAACCTTGGTGGGTAGTAGGAGGTAGCAGCCACAAGCAAGAGGCACTGATAGGCCTCATTTCTAACTAA 1593 0.4401 MEEDQEVKHSCKFCSKSFPCGRSLGGHMRSHVTNVSSETEKVSSFNNNNSGDRDRETGIMGSEGGISNGGYGLRENPKKTWRFTNSVDDTMLVLDKLCKECGKGFHSWKALFGHMKCHSERVSQNNSSLMEDQDSWTENTNASQKMVSDDSHSDNEATAPNRRRRSKRRRTRYVAPSTSSVSFVSEAEQEQEQEEVAMSLMMLSRDVSPWCGLSSVNSFHFESPSLVPTNLDSKAEGKRVVSNDSENKVTKPKDMKWDFGNLDASYLNSKGKISSELDKKAELDTDSAFEDNGIDDNRNNKYTSIKAKYLDCELKASSSKSWVKNKSPEAELSKSSNKRGKFECATCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEADISPDPTTESKLLKNEYVEEHEMVTVTTTTTGFDNEEERERDLKKGKVHECPICLKVFPSGQALGGHKRSHHLPNGSDIARNCQSQRVVLGGEDPEIRDFFDLNLPASTEEEGNSHGHAEPYKPWWVVGGSSHKQEALIGLISN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01001 530 MobiDBLite consensus disorder prediction 34 73 - -
Vimu10g01001 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Vimu10g01001 530 SMART c2h2final6 9 31 IPR013087 -
Vimu10g01001 530 SMART c2h2final6 96 118 IPR013087 -
Vimu10g01001 530 SMART c2h2final6 342 364 IPR013087 -
Vimu10g01001 530 SMART c2h2final6 435 457 IPR013087 -
Vimu10g01001 530 ProSitePatterns Zinc finger C2H2 type domain signature. 344 364 IPR013087 -
Vimu10g01001 530 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vimu10g01001 530 Gene3D Classic Zinc Finger 1 122 - -
Vimu10g01001 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Vimu10g01001 530 SUPERFAMILY beta-beta-alpha zinc fingers 6 33 IPR036236 -
Vimu10g01001 530 MobiDBLite consensus disorder prediction 126 148 - -
Vimu10g01001 530 MobiDBLite consensus disorder prediction 34 55 - -
Vimu10g01001 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 342 369 IPR013087 -
Vimu10g01001 530 ProSiteProfiles Zinc finger C2H2 type domain profile. 435 457 IPR013087 -
Vimu10g01001 530 Pfam C2H2-type zinc finger 98 119 - -
Vimu10g01001 530 Pfam C2H2-type zinc finger 434 458 - -
Vimu10g01001 530 Pfam C2H2-type zinc finger 9 31 - -
Vimu10g01001 530 Pfam C2H2-type zinc finger 342 366 - -
Vimu10g01001 530 SUPERFAMILY beta-beta-alpha zinc fingers 97 364 IPR036236 -
Vimu10g01001 530 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Vimu10g01001 530 MobiDBLite consensus disorder prediction 126 176 - -
Vimu10g01001 530 Gene3D Classic Zinc Finger 339 457 - -
Vimu10g01001 530 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01001 Vimu-Chr10 9194078 9195670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g01001 1 497 C2H2 Transcription Factor Family AT1G26610 32.169 2.04e-46 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu10g01001 zf-C2H2_6 4.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01001 - - vra:106757260 1002.66