Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00999 ATGGAGCTCACCGAAGAACAACAACGACAAGTTGAAGCGAACCGTGCGGCGGCGATCGCAAAACGCAAAGCGTTCTTAGAATCCAGAGCGCAACGAGAAGAACAATGTCATGGTGAAGGAGAAAAGACTACCAACCCCAACCCATGGCAGCTTTTCAAGTGCCAAAAGTTTCCTAAAGCTCAACCCCCGAAGTTCCTCGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATCACACCCATTCAGCTTCCTCCATTCCCCTTCCCCGGTCACCAGCATTGCCTCGCCACTCTAAACTCCATTCTCTCACATGTGATGCTTTCGCACTTCACGCAGACCACCGGAGGGGTGGAGGTATGCGTGTTCAAGCTCACGGAGTACCACGCCGTGGTCAGACAGTTGAAGGTCGAGGTGGAGACGCTTCAGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTGGTCGAGCGTCTCTCGCTTTCGGTAGCTTCTGGGCGGTGGACGCCGGTGCGGCCGGAGCACTTGGCCGACGAGGAGGTAGAGCGCCTGATTGCGAAACTCCCGAGTACTCTCCTGGATGTGTTGCTCCCTTTCCAGCATGACGGACTGCGTTTCGCGTTGAGAAGAGGCGCTCGGTGTCTCATTGCCGATGATATGGGCCTCGGGAAAACACTCCAGGCTATTGCTATTGCGGGGTGTTTTCTGGATGAAGGTTCCATACTCGTGGTTTGTCCTGCTGTGTTGCGGTTCACGTGGGCGGAGGAATTGGAGCGCTGGCTTCCTTTTTGTTTGCCGGCTGATATACATCTCGGTAATGTTTTGCTTTTAAGAAAGGTTGTGAGTGCTTGGGATGAGAGTACAGTTCACGTGTTTGAGATTATGTTAATGGAATTCTTTGGATGCATAGATGATTCTACTGAAGATGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAAACCTAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGAAAGAACATGCTTGAACTTCAATGGGCTCTTTTGGTTGTTGATGAATCGCATCATGTGCGATGTACGAAGAAAACAGAACCAGGAGAGTTTGTAGCAGCGCTGTATGAATTTGGTTTGAGGGAGGAGATTCATATTAGTGGGATAAGAAGATCTGATTGGGGTTTGATACAGGCTGTTCTTGATGTGGCTTCAAAAGTCAATCGTATAATTCTGCTATCAGGCACACCTTCTCTATCAAGGCCTGGTTTGCTGGGGAAGACTAAATACGAATTTGCAAAAACTTATTGCAATTTAAAATATATCAAAGGAAATCAAGGAAAATATTTTCCGAATGGTGGGATTATGCTGCAGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAATGTGTTACTGAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCGAAACGGCGGCAAATTATAAGACTGTTGATAAAGAGATCGGATATTGTTGCTGCTAAAACTGCAATTGGGGTATTAAGTATTGATGCCACTGAAAGGGAAAGTGAAGACATAGCTTTGGAAAATTTGGATGAAACAGATGGCAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATAGTTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTGTATGTGAGAAAGGTATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTAGGTCGTCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCACAAAGCCCAACTCTAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGAGGACAAACAAATGCGGTTAATGTTTACATATTCTGTGCAAAGGATACCTTGGATGAGTCACATTGGAAAAATTTAAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGAAGAAAGAGATAGAGGTTGAATGTATTTCTTATTTAGGCTCATCTTTTAAAAAAGATAATTGTGAAGAGCAATCCAAATGCAAAGATGCAGAAGGGGAAACACAATTGGATTTGCAACCTTCTGCAGTAAATTCAAATGATTCAGAAGCAAATCAAGATGATAAATCTGGGGAGGGAACTTCTTTTCTTAACAAGTCAATTCAGAGTTTTATTGTTTTGGCTGATGACGTCTCCTGCCAAGATTCAGGCACAGGTTTAGTTCTGGATGGAAATTGTGATGCTGATGTCTTTGAAGATATGGAGAGATATCCTGGAAAGAGTTTAGAAGACGCACATCCATTGCAGGATATGAAAACTGTTTCAACAACGGAAGCAGATGATAACCAGTCTGCTCAGCTGGTTGAAGCCGATAGTCATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATATACCGGAAGGATCCACTTGTATACTTGCATTTTTGGTACTGATAAAAGACCACAACCAGTTTATGAAAATTTTCGACCAGAAGAACTTGAGTTGTTGAGTCCTGTTGCTCCTGATCAGAAACAGGTTCATGATGAAAAACAAAAGATAGAGTCTGTTAAGGACAACCCCTCTTATAGGCATGCTCTTCTAGCTTTTGCGGGAGAATGGAAGAACTTAAGGCCAATTGAACGCCGGAAATTAATTGGAAAACCGTTGCAACTCCCTTTGGCTGTTGAATTATGCTATTTGACGGAAAGCAACAACTACAACAACAATGGATTATTAAATGGTGGAAGTAAAAGGCGCAAGACTCCCATAATAGAGGTTAGCTATCCATTACCACCAGATGCAGTTTGGAAGAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAAGGAAAGAGAATATACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAACTTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGAGACCTGAATTTCTAGAAGATCTTTTTTGTAACCTTGTATGCTATGAGGAGTATCGATTGAGAACTAGCAACTGTTTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGTTTGTGCACAAACTGCCAATTAGACTGTCATAAGCTTGTTAAGGATACAAGACCTTTGTCATTGGAAAGGCGACGAGAATATATACAGAAAATAGCACCAAATATTGCTAAGCGGAAAAACATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGGAATGCATGGCATGCTGATCACATTGTTCCAGTATATCAAGGAGGAGGTGAATGCACGCTAGAGAATATGCGTACTCTTTGTGTGGCCTGCCATTCTGATGTGACTGCCGCACAATGTGCTGAACGATCTAAAGCAAGAGCGAATGCGAAGAAAAAACTGAAAGAGTTAATGAGCAGTATCAAAAATGGTATTACGTGTTCTGCTGTCACTAATATTAAGGACCATAGGGCTATCGATGAACGAGGGAGTAGTGTAATCGAGGATGAGCTTTTACTCGAGGTTCCTGGAAGTGCCTATTCTATTGCAGACAGCTAA 3675 0.4318 MELTEEQQRQVEANRAAAIAKRKAFLESRAQREEQCHGEGEKTTNPNPWQLFKCQKFPKAQPPKFLARLEICSPDSFSITPIQLPPFPFPGHQHCLATLNSILSHVMLSHFTQTTGGVEVCVFKLTEYHAVVRQLKVEVETLQVEEIPWATFNVVERLSLSVASGRWTPVRPEHLADEEVERLIAKLPSTLLDVLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSILVVCPAVLRFTWAEELERWLPFCLPADIHLGNVLLLRKVVSAWDESTVHVFEIMLMEFFGCIDDSTEDVFGHQDNPIYLTRKPRVVVISYTMLHRLRKNMLELQWALLVVDESHHVRCTKKTEPGEFVAALYEFGLREEIHISGIRRSDWGLIQAVLDVASKVNRIILLSGTPSLSRPGLLGKTKYEFAKTYCNLKYIKGNQGKYFPNGGIMLQDYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTAIGVLSIDATERESEDIALENLDETDGKLSYQELGIAKLSGFREWLALHPIVAGSENASKMIIFAHHHKVLDGVQEFVCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQSPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAKKEIEVECISYLGSSFKKDNCEEQSKCKDAEGETQLDLQPSAVNSNDSEANQDDKSGEGTSFLNKSIQSFIVLADDVSCQDSGTGLVLDGNCDADVFEDMERYPGKSLEDAHPLQDMKTVSTTEADDNQSAQLVEADSHCSNQVDFLRFEVSPYTGRIHLYTCIFGTDKRPQPVYENFRPEELELLSPVAPDQKQVHDEKQKIESVKDNPSYRHALLAFAGEWKNLRPIERRKLIGKPLQLPLAVELCYLTESNNYNNNGLLNGGSKRRKTPIIEVSYPLPPDAVWKKVYLRSGLGKKEREYTQGWSVTDEPLCKLCQKQCMGKNAKRPEFLEDLFCNLVCYEEYRLRTSNCFLREELFKIEHGLCTNCQLDCHKLVKDTRPLSLERRREYIQKIAPNIAKRKNMFEKLVNEPTEGNAWHADHIVPVYQGGGECTLENMRTLCVACHSDVTAAQCAERSKARANAKKKLKELMSSIKNGITCSAVTNIKDHRAIDERGSSVIEDELLLEVPGSAYSIADS 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00999 1224 MobiDBLite consensus disorder prediction 741 762 - -
Vimu10g00999 1224 CDD SF2_C_SNF 545 674 - -
Vimu10g00999 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 711 IPR027417 -
Vimu10g00999 1224 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1172 - -
Vimu10g00999 1224 MobiDBLite consensus disorder prediction 735 762 - -
Vimu10g00999 1224 Pfam SNF2-related domain 212 360 IPR000330 GO:0005524|GO:0140658
Vimu10g00999 1224 SMART helicmild6 580 663 IPR001650 -
Vimu10g00999 1224 Pfam Helicase conserved C-terminal domain 562 663 IPR001650 -
Vimu10g00999 1224 Pfam HNH endonuclease 1121 1155 IPR002711 GO:0003676|GO:0004519|GO:0008270
Vimu10g00999 1224 Gene3D - 469 758 IPR027417 -
Vimu10g00999 1224 SMART ultradead3 191 454 IPR014001 -
Vimu10g00999 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 441 IPR027417 -
Vimu10g00999 1224 SMART HNH_5 1104 1152 IPR003615 -
Vimu10g00999 1224 CDD HNHc 1115 1155 IPR003615 -
Vimu10g00999 1224 Gene3D - 171 419 IPR038718 -
Vimu10g00999 1224 Gene3D - 1047 1181 - -
Vimu10g00999 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 431 IPR014001 -
Vimu10g00999 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 555 709 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00999 Vimu-Chr10 9133363 9164855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00999 560 681 RAD5 or RAD16-like Gene Family AT1G11100 37.903 1.79e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu10g00999 SNF2_N 5.1e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00999 K25861 - gmx:100788690 1828.53