Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00987 ATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTTAGAGCCGTTCAGACAAGAGCTGAAAATTCCCGTGGCCTCTGGCAACCATTCACTGCCCTTCTCGGTGACAATCCCAATTTTTATGAATTGTCTAGAATTGCTATTATCAGTAGAGAAGTGTTACTTGTACGACAACGGAGTGCTGATGTTAAGAAGAACGTTGTTGTTACCGTTTCCTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACATCTGTCAAGATAAGCAGGGTTTTGCACAAATTGAATTCCGGACCCGATAAAGAGACAAAATATGTCATACTGGGAGAGAAGGCTAAGGCTCAATTGGTACGTGATTCAAAGAAAGACATTGAGCTCTCCCTTACTGAATTGCAGAAGAATCCTCTGAATTATACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAACGTGGAGTATGATGCACTAAGGGTTGTTTTCAACAAATTTCATTCTGTTGTTTCATTTTTGCCAACAGTGTCAACTATACTATCTCCCGAGGTTATCGAGAGAGAGGCTGAATCGGGAGGAAAGCTTGGGGAACTAGATTCATATGAGATTGAAGGTGGCGAGACAAAATCTGAAATTCTTCAGAATCTGGCTGAGTTCCAGTTCTCTTGTGTCATGTACAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCAGCCATGGACAGTTCTAGTAGGAACGCTGGGGACATGCTTGATCGTCTCACCCTCACTTATAACAGAACTCGTCAAGCATCTATCACCACAGAATTGATAGAGATTATCTCTGGAGCTTCAGCACTGGAAGGTTAA 882 0.4308 MKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPNFYELSRIAIISREVLLVRQRSADVKKNVVVTVSSDKGLCGGINSTSVKISRVLHKLNSGPDKETKYVILGEKAKAQLVRDSKKDIELSLTELQKNPLNYTQVSVLADDILKNVEYDALRVVFNKFHSVVSFLPTVSTILSPEVIEREAESGGKLGELDSYEIEGGETKSEILQNLAEFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALEG 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00987 293 Gene3D - 17 250 - -
Vimu10g00987 293 PANTHER ATP SYNTHASE GAMMA CHAIN 1 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 NCBIfam ATP synthase F1 subunit gamma 1 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 Gene3D ATP synthase, gamma subunit, helix hairpin domain 1 288 - -
Vimu10g00987 293 Pfam ATP synthase 1 291 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 1 291 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 FunFam ATP synthase gamma chain 246 288 - -
Vimu10g00987 293 PRINTS ATP synthase gamma subunit signature 269 290 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 PRINTS ATP synthase gamma subunit signature 164 181 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 PRINTS ATP synthase gamma subunit signature 238 257 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 PRINTS ATP synthase gamma subunit signature 72 91 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 CDD F1-ATPase_gamma 1 288 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vimu10g00987 293 FunFam ATP synthase subunit gamma 17 250 - -
Vimu10g00987 293 PIRSF ATP_synthase_gamma 1 291 - -
Vimu10g00987 293 ProSitePatterns ATP synthase gamma subunit signature. 277 290 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00987 Vimu-Chr10 8991338 8996396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00987 1 291 Primary Pumps ATPases AT1G15700 31.193 1.59e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00987 K02136 - gmx:100790402 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00987 10 8991338 8996396 Vimu10g00987 10 8991338 8996396 ECH