Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00983 ATGCAGCTACCCAAGGAAGATATCAAGCTTGAACAATGCGATATATGCGGGGCTCGTGGTTTGATAGAAAAAGTTGTTACTTGCTCTAAATGCGGTGTGATTCGACATGCTTATTGCATTCAAATTAATACCACAATAATTCCTAAAGACTGGCTTTGTGAGACTTGCCAATCCAAGCATGATTCAACTTCACCTCATAAAGTGAACCAGGATGTCAGTTCGTGGGCTAGTAAAAGGAAATCATCTGTCAAAAGAGCCAAAGTGAAGTACCTTGACTTGGATGAAGTCATTAGACTTTCTTCTGCAAAGGCTTCTGGTGGATCCAAAAATGTTATTTCCAAGATTCCCTCCCTGACTGCAAAATCAAATCCTCCCATATTACCTCCTAAAGTACTTGGGAAGCTTCCAAGAAATAATGAAGTACTCAAGAAAACAATGACTAACCAACATGATTCTTGCTCATTGTTTAAAGGATCAACACATGAGTGTATAGAAGAAAATCAGCAAACCTTTCGTGGACTGGTAGCTGGCAAAAATGTACAGGCCCATGATCCTCAGAAAGAAAAGGCTACAAAAGATGCCCCTTTTGGAGATTTATCAGCAACAAAATCTTTCGCCATTGTTGGTGGTGAACCTAGCGACCATGCTGAGTGTAACAGGTCTACTATGGAAAAGAGTAACCCTCAGAGTATTCAGAAAAACTTAAACCTTTATCGTGAATTTTTACCCTCCTCAATTCATGCTTGGAGGGGTCAGATCCAAATTCTTCAAACAGCAGCATCTAGCATAATTTATGATGGGTTTGAGGCCCAACCACCATGCATTGTTAACAAGAAAGCATATAAACTTTCAAGAGAAATGCCATCAGTCATGCAACTGGAGTCACTTCCTGCATTGAATGTCTTGACTGACATATTCCCAGATGATTCTCCTAACCTTCAGGATATTGCATTGTATTTCTTTCCATCAGAACATACTGATAGGTTCAGAAAGAACCTGAATGACATATTGAAGTTTATGAATGACAAGAAAGTAATGCTAAGAAGTTTTATTGATGGAGTGGAGTTGCTAGTATTTACCTCAAATCAACTTGACATAGACTCAAGGGGTGTTATTGCTGAAGTAAAGGCTGGACATTTCCTATGGGGAGTCTTTCGCCAATTTAACAGTGATGAAGGCATGGAACCAGTTGATATGGAAATTGATATGATTGGAGGAAAAGATGTGGAGGGAAAAGTTGATCGCATTATGAAAGATAAACCCAAGAGGCTTATTATTGGAAAAGTGTAA 1290 0.3907 MQLPKEDIKLEQCDICGARGLIEKVVTCSKCGVIRHAYCIQINTTIIPKDWLCETCQSKHDSTSPHKVNQDVSSWASKRKSSVKRAKVKYLDLDEVIRLSSAKASGGSKNVISKIPSLTAKSNPPILPPKVLGKLPRNNEVLKKTMTNQHDSCSLFKGSTHECIEENQQTFRGLVAGKNVQAHDPQKEKATKDAPFGDLSATKSFAIVGGEPSDHAECNRSTMEKSNPQSIQKNLNLYREFLPSSIHAWRGQIQILQTAASSIIYDGFEAQPPCIVNKKAYKLSREMPSVMQLESLPALNVLTDIFPDDSPNLQDIALYFFPSEHTDRFRKNLNDILKFMNDKKVMLRSFIDGVELLVFTSNQLDIDSRGVIAEVKAGHFLWGVFRQFNSDEGMEPVDMEIDMIGGKDVEGKVDRIMKDKPKRLIIGKV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00983 429 Pfam PHD-finger 13 58 IPR019787 -
Vimu10g00983 429 SUPERFAMILY FYVE/PHD zinc finger 7 61 IPR011011 -
Vimu10g00983 429 SMART PHD_3 12 57 IPR001965 -
Vimu10g00983 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Vimu10g00983 429 PANTHER - 13 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00983 Vimu-Chr10 8945129 8957166 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g00983 PHD 8.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00983 - - var:108330054 758.444