Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00952 ATGGCTGTGGAAAATCAAAGGGATCATTTGGGGGATGAAGATGGGGGTGGTGACCGTTTTCCCGTGGGTATGCGTGTTCTTGCAGTGGATGACGACCCACTTTGTCTCAAAGTGTTGGAGAATCTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAATCAGGCAGTTGAGGCTCTGAAAATGTTGAGGGAAAACAGAAACAAGTTTGACCTTGTAATCAGCGATGTGAATATGCCTGACATGGACGGATTTAAGCTCCTTGAGTTGGTAGGACTTGAAATGGACCTCCCTGTCATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGCAGGGTGTTACACATGGGGCTTGTGACTATTTACTGAAACCTGTTCGAATTGAAGAGCTGAAGAATATATGGCAGCATGTGGTCCGAAGAAAGAATTTTGATGGCAGGGATCAGAGCAAGGCTTCCAATGATGAAAAGGCTCTGAATATTGCTGGGGAAGGTAGCCTAAGCCTAAGATCAGAAAACAGTGCTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAGAGTGAGGAAGAAGAAGATGATGGGGAAGGGAATGGAGATGATGATGACCCCTCAGCACAGAAGAAGCCTCGTGTTGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCTGTTAATCAACTTGGCCTAGAAAAGGCTGTTCCCAAGAAAATTCTTGACCTGATGAATGTTGAAGGGCTTACCAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTCTATCTGAAAAAGGCAAACCATCAAGCTAACATGGTTGCTGCATTGGGTGGTAGTGATTCTTACTTACGAATGGGTTCAATCGATGGATTTGGAGATTTTTGCACCGCTTCTGGTTCTGGAAGGATCTCAAACACTACATTACCATCATATGCATCTTCTGGAATTTTCAGTAGGCTGAATTCCCCAGCTGGATTGAACATGCGAGGTATCAGTTCTTCTGCACTTATTCGTCCTGTTCAGACTCAAAACATCAACAGCTCCTTAAACACACTTGGAAACATTCAGCCATCGATTTTTTCTGCAAATCAGAGCTCAAGTTTGTTACAGGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGTTCAACCGGTTTATCGCAGCTAAGCCAAGTTGATTCAAGTGCATTTACAGTTGCCTCTGGCTTCCCAGACAGTAGGGCTACTACAGTTAATGGTCCAAACAATTCTCTATCATGTGGCTCAAATAATCATATAATCTTACAAGGAAATCCACAGCAAACACATGGCCCAGGAACATTTAGAAATCAGTCTTCTGTTAGAGCAGCTTCCTTGAATGCAGAATCTTTTGGCATAGGTGGTTCTTCTAATATGTTGGATTATAATCGGTGCAACAAAAACTGGCAGAATGCGGCACAGCTATCCAAATTTCCGGCCAATTCCTCGCCATTGTGTGAGGCTTTCGGCAATGACCAACTGCCTCCCACTAGCATCAATGTTTCCAACTCAGGTACTCACATTGGCAACAGTCCGGTTGATTTTTCTTCCAGAATGGCAATGGCTGTTCCTTTGGAAGATGTACAGCCTTTAAGCTACGCACCACAACAAAGATGGGAAGAACATAAATTGGATTATGACCAAAACTTGAGTCGACCCTTCAATCCTGTAAATCCATATGCTTCTTCCAGTGCAGCAACAAGTTCTGTGGGGCTTGGCTTAAACCAAAATAACACAATTTGTAGCAATAGAATTAATGCATCTTTTGTTGGTCCATGCACTGAAGTTGATAAATTCTCTTCTGACATTCCACTGAAGTCGAATGAAGCATACATTTTGGAGCAACTAAAGTCCCAAGAAGGATTTATGCAGAATACTTTTGGTACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAACAAAATGAGTTAACGTTGTTGGATGGAGAAATTGGATTTGATGCCTCCTACCCTGTTGGATCATGCAACTGA 2034 0.4282 MAVENQRDHLGDEDGGGDRFPVGMRVLAVDDDPLCLKVLENLLRKCQYQVTTTNQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMQGVTHGACDYLLKPVRIEELKNIWQHVVRRKNFDGRDQSKASNDEKALNIAGEGSLSLRSENSADQNKRLGKKRKDQSEEEEDDGEGNGDDDDPSAQKKPRVVWSVELHRKFVAAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKANHQANMVAALGGSDSYLRMGSIDGFGDFCTASGSGRISNTTLPSYASSGIFSRLNSPAGLNMRGISSSALIRPVQTQNINSSLNTLGNIQPSIFSANQSSSLLQGIPTSIELNQSKQSNCSTGLSQLSQVDSSAFTVASGFPDSRATTVNGPNNSLSCGSNNHIILQGNPQQTHGPGTFRNQSSVRAASLNAESFGIGGSSNMLDYNRCNKNWQNAAQLSKFPANSSPLCEAFGNDQLPPTSINVSNSGTHIGNSPVDFSSRMAMAVPLEDVQPLSYAPQQRWEEHKLDYDQNLSRPFNPVNPYASSSAATSSVGLGLNQNNTICSNRINASFVGPCTEVDKFSSDIPLKSNEAYILEQLKSQEGFMQNTFGTLDDIMGAMVKREQNELTLLDGEIGFDASYPVGSCN 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00952 677 Gene3D - 23 159 - -
Vimu10g00952 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Vimu10g00952 677 Gene3D - 207 269 - -
Vimu10g00952 677 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Vimu10g00952 677 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Vimu10g00952 677 FunFam Two-component response regulator 207 270 - -
Vimu10g00952 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 381 IPR045279 GO:0009736
Vimu10g00952 677 SMART REC_2 24 136 IPR001789 GO:0000160
Vimu10g00952 677 PIRSF RR_ARR_type-B 1 677 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu10g00952 677 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Vimu10g00952 677 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Vimu10g00952 677 CDD REC_typeB_ARR-like 26 140 - -
Vimu10g00952 677 SUPERFAMILY CheY-like 23 145 IPR011006 -
Vimu10g00952 677 MobiDBLite consensus disorder prediction 147 210 - -
Vimu10g00952 677 MobiDBLite consensus disorder prediction 177 192 - -
Vimu10g00952 677 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00952 Vimu-Chr10 8530386 8534489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00952 18 676 Response Regulator Gene Family AT2G25180 41.456 2.56e-134 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu10g00952 Response_reg 4.3e-26 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00952 K14491 - gmx:100776075 1127.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00952 10 8530386 8534489 Vimu10g00952 10 8530386 8534489 ECH