Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00931 ATGGAGATATGTAATGTAGAAAAGCACTGGAGTAGGCTTAATTATTCTGGTGTTGAAGTTCTGAGATGGGAATTTTCCAAGTTGGTGGAGGCTTTGCCTAACCGACATCTCTCCTTGGTGATGGCTTTGGGAGTGTTCGGTTCTGTTCTAGTTCTGACACTCTTCTTCAAACACTTATCATCCCAGCAACCAAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGACTTAGCATCCTCCCAGGTCTACAACTTTTCTGATTCAGTCTGCTCATTTCGAGGGGTTTCATGTGATGCCAAGAAAGAACATGTTATTGGGTTAGTCTTTTCTGGCATGGACCTTTCTGGTTCTATTCCAGACACCACTATAGGTAAGCTCACCAAGCTTCGATCTTTGGACCTTAGCCACAATAAAATCACCGACTTGCCTCCTGATTTCTGGAGTTTTAGCTCGCTCAACAACCTTAACCTCTCTGGCAATAAGATTTCTGGTTCATTGACTAACAACATAGGAAACTTTGGTTTGCTAGAAGTGTTGGACTTGTCCGGCAACAATTTCTCTGGGCCAATTCCTGAAGCTATCAGCTCCCTCGTGAGTCTGAAAGTCATCAAACTTGACCACAACAGGTTTGAGCAAAGAATACCTTCTGGGATTCTTAAGTGTCGTTCTCTTGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTTCCGGATGATTTTGGTGCTGCTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAACGGCAGTGATTCTGATATTTCTGGGTTGAAGTCCATTGTGAGTCTGAATATATCTGGAAATTCCTTTCAGGGTTCTGTGATGAAGTTATTTCAGGGAAGGCTTGAGGTCATGGATATTAGAAGAAACCAATTTGAAGGTCGCATTTCTCAGGTACATTCCATCTCTAATTACAATTGGTCTTATTTGGTTTTTCTGGATTTGTCAGAGAATCTGCTGGATGGAGAAATTTCCCAAATTTTGATTGAATCCAAGAACCTAAAACACCTTAATATTGCCCACAATAGATTTAGCAGACAGAAATTCCCCAAGGTTGAAATGCTATCTGGATTAGAATATCTGAACTTGTCCAAAACTAGTCTCATTGGTTACATTCCTGCTGAAATCTCTCAACTTCGAAATTTGAGTACACTTGATGTTTCTATGAATCATCTAACAGGGAAAATCCCTTCACTAAAAAATAGAAACCTCCGAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATATCCCATCATCAGTCATAGAGAAACTTCCTTCAATGCAGAAATACAACTTCTCTTATAATAACTTATCCTTCTGTGCTTTGGAAATCAAATCAGCCATCATCCAAAGAGCATTCTATGGATCAGTGAACAGTTGCCCCATTGCTGCAAACCCAAGTCTTCTGAGAAAAAGAGCCACTGAAAATAAGGGAATGAAGCTTGCTCTTGCATTGACCTTCTCAATGATCTGCTTGATTGCTGGGCTTATGCTTCTAGCTTTTTGTTGCCTTAAGAAAACAAAACCACGGCCTGTTAAACAACCTTCATACAATGAAGGGCATAACATGTCAGGACCCTTTTCATTCCACACTGATTCAACCACATGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGACAAGCCACTATTAAATATCACATTCGCAGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGGAAATTCGGGCCAGTTTATAGAGGATTTCTACCAGGTGGTATTCACGTAGCAGTAAAAGTTCTGGTGGTTGGATCCACTCTTACAGATAAAGAAGCTGCAAGAGAACTTGAGTATCTTGGAAGAATAAAGCATCCTAATCTTGTCCCTCTAACAGGATATTGTGTAGCTGGAGATCAGAGGATTGCTATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTCTATGACTTGCCACTTGGTGTACTTCAAAGTACAGATGATTGGAGCACAGATACATGGGAAGAAGATGTGAGTAATGGGATTGAAAATGCTGGAGCAGAAGGAGGTCTCACAACTTGGAGATTTCGCCATAAAATCGCACTTGGCACTGCTCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTATATTTGGATTACAACTTGGAGCCAAGACTCTCTGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGGTTGGATGAAGAGAGTGCACTTTGTTCAGCTGGCTATGTTCCACCAGAGTTTTCTCAAGAAGAATTTTGCACCTCAACTCCAAAATCTGATGTGTATTGTTTTGGGGTTGTTCTCTTTGAGCTGCTATCTGGGAAGAAACCAGTTGCAGATGATTATCCTGATGTAAAAGAAGGAACTTTGGTTAGCTGGGTGAGAGGGTTAGTGAGAGAGAACAAAGGTTCAAGAGCCATTGATCAAAAAATTCGTTATACTGGAGCAGAAGAGCAAATGGAAGAAGCCCTTAAGATTGCTTATCTCTGCACTGCTGATCTTCCTTCCAAGCGACCCAGCATGCAGCAGGTTGTTGGACTTCTTAAAGACATCGAACCTTCTAATTAG 2682 0.4113 MEICNVEKHWSRLNYSGVEVLRWEFSKLVEALPNRHLSLVMALGVFGSVLVLTLFFKHLSSQQPNTDDFFVSEFLKKMDLASSQVYNFSDSVCSFRGVSCDAKKEHVIGLVFSGMDLSGSIPDTTIGKLTKLRSLDLSHNKITDLPPDFWSFSSLNNLNLSGNKISGSLTNNIGNFGLLEVLDLSGNNFSGPIPEAISSLVSLKVIKLDHNRFEQRIPSGILKCRSLVSIDLSSNQLSGTVPDDFGAAFPNLITLNLAGNSINGSDSDISGLKSIVSLNISGNSFQGSVMKLFQGRLEVMDIRRNQFEGRISQVHSISNYNWSYLVFLDLSENLLDGEISQILIESKNLKHLNIAHNRFSRQKFPKVEMLSGLEYLNLSKTSLIGYIPAEISQLRNLSTLDVSMNHLTGKIPSLKNRNLRVLDLSNNNLSGDIPSSVIEKLPSMQKYNFSYNNLSFCALEIKSAIIQRAFYGSVNSCPIAANPSLLRKRATENKGMKLALALTFSMICLIAGLMLLAFCCLKKTKPRPVKQPSYNEGHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQSTDDWSTDTWEEDVSNGIENAGAEGGLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEESALCSAGYVPPEFSQEEFCTSTPKSDVYCFGVVLFELLSGKKPVADDYPDVKEGTLVSWVRGLVRENKGSRAIDQKIRYTGAEEQMEEALKIAYLCTADLPSKRPSMQQVVGLLKDIEPSN 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00931 893 SUPERFAMILY L domain-like 271 455 - -
Vimu10g00931 893 Gene3D Ribonuclease Inhibitor 70 218 IPR032675 -
Vimu10g00931 893 Gene3D Ribonuclease Inhibitor 416 486 IPR032675 -
Vimu10g00931 893 SUPERFAMILY L domain-like 81 313 - -
Vimu10g00931 893 PRINTS Leucine-rich repeat signature 132 145 - -
Vimu10g00931 893 PRINTS Leucine-rich repeat signature 394 407 - -
Vimu10g00931 893 SMART LRR_typ_2 417 440 IPR003591 -
Vimu10g00931 893 SMART LRR_typ_2 200 224 IPR003591 -
Vimu10g00931 893 SMART LRR_typ_2 129 151 IPR003591 -
Vimu10g00931 893 SMART LRR_typ_2 249 272 IPR003591 -
Vimu10g00931 893 SMART LRR_typ_2 370 394 IPR003591 -
Vimu10g00931 893 SUPERFAMILY Protein kinase-like (PK-like) 565 886 IPR011009 -
Vimu10g00931 893 FunFam Leucine-rich repeat receptor protein kinase EMS1 172 266 - -
Vimu10g00931 893 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 269 889 - -
Vimu10g00931 893 ProSiteProfiles Protein kinase domain profile. 587 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00931 893 Gene3D Ribonuclease Inhibitor 219 415 IPR032675 -
Vimu10g00931 893 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
Vimu10g00931 893 Gene3D Phosphorylase Kinase; domain 1 547 662 - -
Vimu10g00931 893 FunFam Calmodulin-binding receptor kinase CaMRLK 295 414 - -
Vimu10g00931 893 Gene3D Transferase(Phosphotransferase) domain 1 694 893 - -
Vimu10g00931 893 Pfam Leucine rich repeat 225 284 IPR001611 GO:0005515
Vimu10g00931 893 Pfam Leucine rich repeat 120 165 IPR001611 GO:0005515
Vimu10g00931 893 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Vimu10g00931 893 FunFam Putative LRR receptor-like serine/threonine-protein kinase 548 662 - -
Vimu10g00931 893 Pfam Leucine Rich Repeat 418 436 IPR001611 GO:0005515
Vimu10g00931 893 Pfam Leucine Rich Repeat 179 200 IPR001611 GO:0005515
Vimu10g00931 893 Pfam Protein tyrosine and serine/threonine kinase 591 884 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00931 Vimu-Chr10 8374503 8377217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00931 110 889 Receptor kinase-like Gene Family AT5G07280 31.742 5.06e-109 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vimu10g00931 PK_Tyr_Ser-Thr 1.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00931 - - gmx:100807051 1455.27