Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00925 ATGGAAGAGGAAGAACCGATTCAACAACCGCTCACAGACTCGTCGCTAACCACCCATTCATCAACTTCCACTGCTTCCGATGAAGAGCAACTCGATTCAGAAACCCTATCTCTGCATTCTTCTGCTCATATGCAAAGAAGCTCTACCGCAAGTAAGCTTGGCCAAGATGGGAGTAAGGAGTCAGCACAGCATTCTGATGAAGAAACTATTGTAAAGGAGACAGTAGAGGCACCTCAAAAACAGACAGAAAATCAACTTCAGATGTCTGTTTGTTCAACTTCATCGTCTAAACTATCACCAACTTCTGTATCACAGTATTTATCGTCTGCCCCTAGTTCAAGTGTACCACAACAGAGACCATCTCCCAAGGCTGTAAAAGGGCAAAAAATGGACAAAGGAACTCCTTCAGGTGATACAACCCTGTCTTCAGTTTCTGTTCCAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGTTATTACAGGTGTACCCATTCAAATTGTTGTGCTAAGAAGATTAAATTTTGTGACCATTCGGGATATGTGATAGAGATTGTTTACAAAAGTCAACATAGTCATGATCCCCCACACATAGTTGATTCTACTAAGGAAAGTAAATTCCTGCCTTACGGTGAACCAAAAAGAAAATGCAGTGTTCCAAAGCAGTCTAGCAGAGTTCAAATTGATTCTGATCCATCTTCTCCAAAAAAACCTTTATATGAATCACCTTGCAGTGCCAATAAAAATCAAGAAAACTCATCCCATGATGAGAGTGACAAAGTTTTGTTGAAAAAAGAGCATGTTAATGACCCTGAGCCAAAAAGAAGGCAAGTTGCATATGAATTAATTTTTTTCATAGGAAATTTGAGGAATTTACTCTTTTTCTTGTACATGTGGCTGGATGTAATGTCTAATGCTCTTGTCCTTAATATGATAACTAGACTGAACAAAGGTGATTTAACATGCTTGGATTCAGCAGTAAAACCTGGAAAGAAACCAAAGTTTGTTGTACATGCAGCAGAGGATATGGGGATATCAAGTGATGGATACCGATGGCGCAAATATGGACAAAAATTGGTGAAGGGAAACCCACATTTCAGAAACTACTACAGATGCACTTCTGCTGGATGTCCTGTTCGAAAGCACATTGAGACTGCTGTGGATAACGCAAAAGCTGTGATTATAACATACAAGGGAGTGCATGATCATGACATGCCTGTGCCCAAGAAAAGACAGGGTCCACCAAGGGCTTCCCTTGTGGCTGCTGCAGCTCCTGCTTCAATGAAAAATTTGCACTTCAAAAAAAGTGGTTTGGTACAAAACCAGGAAACTTCTTCTGCTCAATGCTCAGAGGACACAGAAGATGAAGCATTGGACCTTGGTGGTGAGAAAGCAATCGAATCAGCCCGAACTCTTCTAAGTATTGGCTTTGAAATTTAA 1482 0.4103 MEEEEPIQQPLTDSSLTTHSSTSTASDEEQLDSETLSLHSSAHMQRSSTASKLGQDGSKESAQHSDEETIVKETVEAPQKQTENQLQMSVCSTSSSKLSPTSVSQYLSSAPSSSVPQQRPSPKAVKGQKMDKGTPSGDTTLSSVSVPRASASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCCAKKIKFCDHSGYVIEIVYKSQHSHDPPHIVDSTKESKFLPYGEPKRKCSVPKQSSRVQIDSDPSSPKKPLYESPCSANKNQENSSHDESDKVLLKKEHVNDPEPKRRQVAYELIFFIGNLRNLLFFLYMWLDVMSNALVLNMITRLNKGDLTCLDSAVKPGKKPKFVVHAAEDMGISSDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNAKAVIITYKGVHDHDMPVPKKRQGPPRASLVAAAAPASMKNLHFKKSGLVQNQETSSAQCSEDTEDEALDLGGEKAIESARTLLSIGFEI 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00925 493 MobiDBLite consensus disorder prediction 266 282 - -
Vimu10g00925 493 MobiDBLite consensus disorder prediction 59 74 - -
Vimu10g00925 493 MobiDBLite consensus disorder prediction 1 148 - -
Vimu10g00925 493 MobiDBLite consensus disorder prediction 223 282 - -
Vimu10g00925 493 SMART WRKY_cls 151 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 SMART WRKY_cls 360 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 MobiDBLite consensus disorder prediction 8 58 - -
Vimu10g00925 493 Gene3D WRKY domain 139 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 Gene3D WRKY domain 345 421 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 Pfam WRKY DNA -binding domain 153 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 Pfam WRKY DNA -binding domain 362 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 FunFam WRKY transcription factor 346 421 - -
Vimu10g00925 493 ProSiteProfiles WRKY domain profile. 146 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 SUPERFAMILY WRKY DNA-binding domain 149 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 454 IPR044810 GO:0003700
Vimu10g00925 493 SUPERFAMILY WRKY DNA-binding domain 355 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g00925 493 MobiDBLite consensus disorder prediction 75 121 - -
Vimu10g00925 493 MobiDBLite consensus disorder prediction 133 148 - -
Vimu10g00925 493 ProSiteProfiles WRKY domain profile. 355 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00925 Vimu-Chr10 8314127 8317307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00925 71 493 WRKY Transcription Factor Family AT4G30935 47.086 1.89e-109 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g00925 WRKY 1.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00925 - - gmx:100127388 590.497