Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00912 ATGGCGCAACGCGGGTGGTCTGAAATATTGTGCATAGCCACTCTATTGTTATGCGGCGGTTTTGCAACCTCCTTTTCCACGGACCCTCCGTTGCTCCAACAACAAAAGGACCGGGTCGACACGCTCCCGGGTCAAACCTTCAATGTTAGCTTCGCACATTACGCTGGGTACATCACCGTCGATGAAAATGCTGAGAGAACGCTCTTCTACTGGTTCATCGAGGCCCTTGAAGATCCTCATTCCAAGCCCCTTCTTTTATGGCTCAATGGAGGACCTGGTTGTTCATCCATTGCTTACGGACAGTCCGAGGAAATTGGACCCTTTTATATAAATCCAGATGGCAAGACTCTTCATCTCAATCCCTATTCTTGGAACCGAGTTGCCAACGTTATTTTTCTTGACACTCCTGTTGGGGTTGGATTTTCATATTCAATTAAGGGATCCGACCTGCTGATCAATGGCGATAACAGGACAGCTGAGGACAATTTAGCATTTCTGCTGAAGTGGTTTGAGCGTTTCCCTCAATACAAAAGAAACGACTTTTTAATTGTTGGTGAGAGCTATGCAGGGCATTACGTTCCTCAACTTAGCCAAGTTATTGTTAAGTACAACTCAGCTAATAAAGAAAATGCTATAAATCTGAAAGGTTTCATGGTAGGAAATGCTCTGACGGATGATTATCATGATCAATTAGGGATGTTCGAGTTTATGTGGTCAAGTGGTTTGATTTCGGATCAAACATACAAGCTTTTGAACCAACTTTGTGATTTTCAATCAGTTGAACACCCGTCACATGCTTGTGATAATATTTGGGATATTGCTTATAAAGAACTTGGAAATATAGACCCATACAGTCTGTATACACCACCGTGCCATGGCAATGTTAGTCAGCTAAGTGGGCTGAGAATTGGTAGACTCGGTCTCAATGCACCATATGATCCATGCACCGAAAGTCACTCCACTGCATACTTCAATCGACCTGAGGTCCAAACAGCTCTTCATGTTGATCCAGATCATAAGCCTGCTACATGGGAGACATGCAGTGATGTGGTAAATTCAAACTGGAAGGATTCTCCAATAACAGTGCTCGATGTTTATCATGAACTTATTGACGTGGGTTTGAAGATATGGGTGTTCAGTGGTAATACGGACACGGTGATACCTGTCACGTCTACTCGCTATAGCATAAATGCTCTGAAGCTACCTACCGCGAGTCCTTGGCGTGCATGGTATGATGATGGAGAGGTAGGAGGATGGACCCAAGAATACGATGGCCTTACGTTTGTGGTTGTAAGGGGTGCAGGGCATGAAGTTCCTTTGCATAAACCAAAACTTGCTCTCACACTCTTCCAGAACTTCTTAGCAGGAACATCAATGCCTGATCTTTACCTTCACAGTGCCTCTTGA 1407 0.4428 MAQRGWSEILCIATLLLCGGFATSFSTDPPLLQQQKDRVDTLPGQTFNVSFAHYAGYITVDENAERTLFYWFIEALEDPHSKPLLLWLNGGPGCSSIAYGQSEEIGPFYINPDGKTLHLNPYSWNRVANVIFLDTPVGVGFSYSIKGSDLLINGDNRTAEDNLAFLLKWFERFPQYKRNDFLIVGESYAGHYVPQLSQVIVKYNSANKENAINLKGFMVGNALTDDYHDQLGMFEFMWSSGLISDQTYKLLNQLCDFQSVEHPSHACDNIWDIAYKELGNIDPYSLYTPPCHGNVSQLSGLRIGRLGLNAPYDPCTESHSTAYFNRPEVQTALHVDPDHKPATWETCSDVVNSNWKDSPITVLDVYHELIDVGLKIWVFSGNTDTVIPVTSTRYSINALKLPTASPWRAWYDDGEVGGWTQEYDGLTFVVVRGAGHEVPLHKPKLALTLFQNFLAGTSMPDLYLHSAS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00912 468 Gene3D - 362 456 - -
Vimu10g00912 468 Gene3D alpha/beta hydrolase 33 293 IPR029058 -
Vimu10g00912 468 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Vimu10g00912 468 Pfam Serine carboxypeptidase 43 455 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 443 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 FunFam Carboxypeptidase 33 293 - -
Vimu10g00912 468 SUPERFAMILY alpha/beta-Hydrolases 39 459 IPR029058 -
Vimu10g00912 468 ProSitePatterns Serine carboxypeptidases, serine active site. 183 190 IPR018202 GO:0004185
Vimu10g00912 468 Gene3D - 315 353 - -
Vimu10g00912 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 169 194 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 120 132 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 133 143 IPR001563 GO:0004185|GO:0006508
Vimu10g00912 468 FunFam Carboxypeptidase 362 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00912 Vimu-Chr10 8152102 8157017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00912 325 459 Calmodulin-binding Proteins AT2G22960 24.265 1.84e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00912 K16297 - gmx:100805227 786.949