Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00897 ATGTTTAAATTCACCTGCTTCCTTTTACTTTTCTCTCCCTTTATAACTTCTCATCACTCACTTCCATTTTCAGTATCATCATCATCATCATCATGGTGCAAACAAGGAAGTTCCGAGGTGTCAGGCAGCGCCATTGGGGTTCTTGGGTATCAGAAATTCGCCACCCACTTCTCAGAAGAAGCAGCACGAGCATACGATCAAGCTGCGATTCTCATGAGTGGACGAAACGCAAAAACCAATTTTCCAATGCTTCAAACTCCAGAAGGTGACCCAAAGACGCTAACACCCACGCACGAAACCCCATCAACCTCAAAGGAACTGGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCTTCACCTTCCATGACTTGCTTGAGATTGGACCCAGAGAACTCCCACATCGGGGTGTGGCAGAAGCGCGCCGGTCACTGTTCTGACTCCAACTGGGTTATGATGGTTCCCTTCGGAAAGAAGGGTGATGAAGGTGGAAACAGTTCCAGGAGTGGTGGTTCGTTTGATTCGTTTTCTGAGTGTGATCAGACGGTGCAAGTTAGAAGACAGGAACATGTGAGAACAGAGATGGAGGAGGAAGAGAGAATCGCTATGCAGATGATAGAAGAACTCCTGAGCAGAAACTGGCCCACTAGCCCTTCTTCATCTAATAACATCTGTTAA 687 0.4687 MFKFTCFLLLFSPFITSHHSLPFSVSSSSSSWCKQGSSEVSGSAIGVLGYQKFATHFSEEAARAYDQAAILMSGRNAKTNFPMLQTPEGDPKTLTPTHETPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGHCSDSNWVMMVPFGKKGDEGGNSSRSGGSFDSFSECDQTVQVRRQEHVRTEMEEEERIAMQMIEELLSRNWPTSPSSSNNIC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00897 228 MobiDBLite consensus disorder prediction 163 184 - -
Vimu10g00897 228 SMART rav1_2 41 88 IPR001471 GO:0003700|GO:0006355
Vimu10g00897 228 MobiDBLite consensus disorder prediction 168 184 - -
Vimu10g00897 228 Gene3D AP2/ERF domain 45 84 IPR036955 GO:0003700|GO:0006355
Vimu10g00897 228 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 59 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00897 Vimu-Chr10 7996986 7997783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00897 58 223 AP2-EREBP Transcription Factor Family AT5G25390 44.578 1.62e-37 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00897 - - gmx:100779921 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00897 10 7996986 7997783 Vimu10g02956 10 40540945 40541647 ECH
Vimu10g00897 10 7996986 7997783 Vimu10g00897 10 7996986 7997783 ECH
Vimu7g01023 7 9965675 9966559 Vimu10g00897 10 7996986 7997783 PCT