Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00893 ATGGGAGACTTATGGTTGGGTTCATTAACCATTTTTTTGACCATTATGGGTTCACAGGGCCAGCTCAAAACCGGGTTTTACTCCTCTTCCTGTCCAAACGTAGAGGCCATGGTTCGGTCCACTGTTCAATCCTACTTCAATAAAGATCCTACCATTGCTCCTGCCCTTCTCAGGCTTCACTTCCATGATTGCTTTGTTCAGGGCTGCGATGGTTCAGTTTTGATTGCAGGCTCTTCTGCAGAGAGGAATGCGTTACCTAACGCTGGTCTAAGAGGTTTTGAAGTGATTGAGGATGCAAAATCACAGCTTGAGGCCAGGTGTCCTGGTGTTGTCTCATGTGCTGACATACTAGCATTGGCAGCACGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCAGTAGCTACAGGAAGAAGAGATGGGAGGGTTTCTTTATCATCTCAAGCCTCAAACTTGCCATCTCCACTTGACCCTATTTCTGTGCAGAGGAAAAAGTTTTCTGACAAAGGCCTAGATGATCATGACCTTGTAACCCTTCTTGGGGCACATACCATTGGCCAAACAGAATGCAGATTCTTCAGCTACCGGTTGTATAATTTCACCACCACTGGGAATTCAGATCCAACCATAAACCAAGATTTCTTAGGCCAACTTAAAGCACTGTGTCCAAATAAAGGAAATGGCTTGAAAAGGGTGTCGTTGGACATAGATAGTCCGACCAAATTTGATGTTAGTTTCTTCAAAAATGTGCGCGATGGTAATGCAATTCTAGAGTCAGATCAGAGGCTGTGGGGAGACTCTGCTACACAAAGTATAGTGCAGAATTATGCAGGGAATATAAGAGGGTTATTGGGTTTAAGATTTGATTACGAATTTCCAAAGGCTATGGTTAAACTTAGTAGTGTAGAGGTTAAGACTGAAGATGAAAAGAAAAGGTCAAAGGGTACAGATGTCAGTTCACGAGGCTTTCTCAGCAGCAACCGTGCTGAGTTTCCTTTGTCTCCTTCTAACATCACCGTTGATGGAACAATCATGCTGAAGCTCCTCGATCTTCTTCCATCCTCATCTTCTAAACTCCTCTCACGATACATTCTCTCACTCTCTACCAAACACCCACCACCGCTCACACGACCATTCTCTCACCACCCTGCCACCACCACCATGTCCATAAACCTACGCACACACGCCTTTGCCGGCAACCCGCTCCGGTCCCGGACTCCTAACCGGGTCGAACCGTTTTCCCCCGTCGCGGCTCACGAGACCTTGAAAACGCGAATTGCGGAGAGCGCGGGCGAGTCCGTGTCCGTGAATTTGAAGGTTTTACCTTTCAGAAACGGGAGGCCCCTGGCGTCTGCGGGTAGCAGTGACACGTGGCGGCTGGCGTGGATGGGGTTGGAGGAGGTGAAGAGGCTGCTGGGTGCGAACCTGAGCGCGGACTCGTTCGTGTATTTGGGGTACGACGCGGACGAGGATTCGGTGTATTGGGCGATCGACTTGTCAAGGGAGAGTGGTTTGGTGGCTGAATTTGGTGCCATGAAGCTCTGCTTTGTCGAGCTGAGAACGCTCATGGTTGCTACCGACTGGGTCGATTTGAAGGCCATGGGGAGCTTGGCCATTGCCGGTCATGGACTTATAGCTGTGTTTGTGTTGCTGGGTGGTGTCATTACTGTTGGGCAAAGGGAAAAAGGCAATTCTACTTTTCTAATTACTGGGTTTGGCCAGGCCAGGGCACTTCTTGAATGGTATAATATATCACGATTTTGTGGACATTGTGGAGAGAAAACAGTGCCAATGGAAGCTGGGAGGCGGAAACAGTGTTCAAATGAATCATGCAAAAAGAGGATATATCCACGAGTTGACCCGGTGGTCATTATGCTAGTAATTGATTCGGACAATGATCGTGCCCTTTTAAGCAAACAATCAAGATTTGTACCTAGAATGTGGAGCTGCTTGGCAGGAGAGAGCTTAGAAGAGGCTGTAAGAAGAGAAACATGGGAGGAAGTTGGTATTGAAGTGGGAGAAGTTGTATATCATAGTTCTCAGCCATGGCCTGTTGGACCAAATAGCATGCCATGTCAGCTGATGGTAGGGTTCTTTGCATATGCAAAATCCCTTGAAATAAATGTGGACAAAGAAGAGTTGGAAGATGCTCAGTGGCATACCAGAGAAGAAGTAAGAAGAGCTCTGGCATTTACTGAATACAAGAAAGCCCAACAAACTGCAGCAGCAAAGGTAGAACAAATGTGTAAGGGAGTAGAAAAGACTCACAGCTTGTCTACAGAGTTCAATGTGGAAAGTGGTGAACTTGCTCCAATGTTTGTTCCTGGACCCTTTGCAATAGCACATCACCTTATATCCTCCTGGGCATTCCCAGATAAAGATGTAAATGGCATTGAATGCCGTTCAAAACAACCTAGTGGCTCTATGTCAAATTTGTAA 2442 0.4685 MGDLWLGSLTIFLTIMGSQGQLKTGFYSSSCPNVEAMVRSTVQSYFNKDPTIAPALLRLHFHDCFVQGCDGSVLIAGSSAERNALPNAGLRGFEVIEDAKSQLEARCPGVVSCADILALAARDAVDLSDGPSWSVATGRRDGRVSLSSQASNLPSPLDPISVQRKKFSDKGLDDHDLVTLLGAHTIGQTECRFFSYRLYNFTTTGNSDPTINQDFLGQLKALCPNKGNGLKRVSLDIDSPTKFDVSFFKNVRDGNAILESDQRLWGDSATQSIVQNYAGNIRGLLGLRFDYEFPKAMVKLSSVEVKTEDEKKRSKGTDVSSRGFLSSNRAEFPLSPSNITVDGTIMLKLLDLLPSSSSKLLSRYILSLSTKHPPPLTRPFSHHPATTTMSINLRTHAFAGNPLRSRTPNRVEPFSPVAAHETLKTRIAESAGESVSVNLKVLPFRNGRPLASAGSSDTWRLAWMGLEEVKRLLGANLSADSFVYLGYDADEDSVYWAIDLSRESGLVAEFGAMKLCFVELRTLMVATDWVDLKAMGSLAIAGHGLIAVFVLLGGVITVGQREKGNSTFLITGFGQARALLEWYNISRFCGHCGEKTVPMEAGRRKQCSNESCKKRIYPRVDPVVIMLVIDSDNDRALLSKQSRFVPRMWSCLAGESLEEAVRRETWEEVGIEVGEVVYHSSQPWPVGPNSMPCQLMVGFFAYAKSLEINVDKEELEDAQWHTREEVRRALAFTEYKKAQQTAAAKVEQMCKGVEKTHSLSTEFNVESGELAPMFVPGPFAIAHHLISSWAFPDKDVNGIECRSKQPSGSMSNL 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00893 813 Gene3D - 25 310 - -
Vimu10g00893 813 SUPERFAMILY Heme-dependent peroxidases 21 310 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 FunFam Peroxidase 154 300 - -
Vimu10g00893 813 PRINTS Plant peroxidase signature 129 144 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 91 104 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 110 120 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 175 187 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 ProSiteProfiles Nudix hydrolase domain profile. 618 743 IPR000086 -
Vimu10g00893 813 ProSiteProfiles Plant heme peroxidase family profile. 21 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 412 791 - -
Vimu10g00893 813 ProSitePatterns Peroxidases proximal heme-ligand signature. 176 186 IPR019793 -
Vimu10g00893 813 Pfam NUDIX domain 623 730 IPR000086 -
Vimu10g00893 813 Gene3D Peroxidase, domain 2 154 300 - -
Vimu10g00893 813 FunFam Nudix hydrolase 19, chloroplastic 619 793 - -
Vimu10g00893 813 Gene3D - 562 618 - -
Vimu10g00893 813 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 619 756 - -
Vimu10g00893 813 Pfam Peroxidase 38 279 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 FunFam Peroxidase 25 166 - -
Vimu10g00893 813 SUPERFAMILY Nudix 573 742 IPR015797 -
Vimu10g00893 813 ProSitePatterns Peroxidases active site signature. 53 64 IPR019794 GO:0004601
Vimu10g00893 813 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 441 536 IPR015375 GO:0016787
Vimu10g00893 813 CDD NADH_pyrophosphatase 622 790 - -
Vimu10g00893 813 CDD secretory_peroxidase 21 310 IPR033905 GO:0004601|GO:0042744
Vimu10g00893 813 Pfam NADH pyrophosphatase zinc ribbon domain 586 617 IPR015376 GO:0016787|GO:0046872
Vimu10g00893 813 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Haem peroxidase superfamily signature 111 128 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu10g00893 813 PRINTS Haem peroxidase superfamily signature 129 141 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00893 Vimu-Chr10 7958197 7968674 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00893 4 308 Peroxidase AT2G41480 69.649 7.55e-159 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00893 K03426 - gmx:100780473 653.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00998 7 9802590 9810730 Vimu10g00893 10 7958197 7968674 PCT