Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu10g00889 | ATGGATGGGAACAAGGACGACGCGCTGAAATGTTTGAGAATCGGTAAAGAGGCGTTAGAAAACGGTGATCGTTCACGCGCGTTGAAGTTCGTGACGAAGGCGCGCCGCCTCGACCCCACGCTCCCCGTCGACGATCTACTCTCCACGATCGAGGCGGATACAGGGGATAAGTCTCCTGCCAAAGAGGCAGCGGCGGAAGGTACCGTGCCCCCCGATCAGCCTTCTCTCCGGCGAAGGGCGGCCGCTACCTCGGCGGCCACGGCGGGGTCGTCCTCCGCCTCGTCCTCTTCGGCCACGTATACCGAAGAGCAAGTTTCAATTATTCGAGAAATTAAGAGGAAGAAAAACTTTTATGAGATATTGGGATTAGAGAAAAGTTGCACTGTTGAGGATGTGAGGAAATCTTATAGGAAACTGTCCCTTAAGGTTCATCCCGACAAGAACAAAGCCCCTGGCGCTGAGGAAGCATTCAAGGCTGTGTCAAAGGCGTTTCAGTGCCTTAGCAATGAAGAGAGTAGGAGAAAGTATGATGTTTCCGGTGAAGATGAATCGGTTTACGAGCAGCGTGCCGCGAGGCCAGCTGCTAGGGGTTATAATGGTTACTATGAGGCTGATGTTGATGCTGAGGAGATATTTAGGAACTTCTTCTTTGGGGGAATGGCCCCTGCAGCCAATTTTGGAGGATTCAGTTTTGGACCAGGTGGTTTCAACGGCTTCAATGGTCACAGGCCTGCTGAACACGCTTCTGGTGGTTTTAATGTTCGTGCTTTAATTCAGTTGTTACCTGTGCTACTGATTTTGCTACTAAACTTTTTGCCTTCGTCGGATCCCGTGTACTCGCTGTCGAAGAGCTATCCTTATGAGCATCGTTTAACTACACCAAAGGGTGTTAACTATTATGTCAAGTCTACAAAGTTTGCTCAGGAGTATCCGCCTGAGAGCGAAGAACGAGCAACTCTTGAAGAAAGGGTGGAGAGGGATTACTTTAGCGTTCTTCGCCAGAATTGTCATTTCGAGTTGCAGCGCCGCCAATGGGGGTATATCCGGGAAACACCGCACTGCGATATGCTGCGGAAGTTTGAGTTGGCGAATTGA | 1095 | 0.5041 | MDGNKDDALKCLRIGKEALENGDRSRALKFVTKARRLDPTLPVDDLLSTIEADTGDKSPAKEAAAEGTVPPDQPSLRRRAAATSAATAGSSSASSSSATYTEEQVSIIREIKRKKNFYEILGLEKSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRRKYDVSGEDESVYEQRAARPAARGYNGYYEADVDAEEIFRNFFFGGMAPAANFGGFSFGPGGFNGFNGHRPAEHASGGFNVRALIQLLPVLLILLLNFLPSSDPVYSLSKSYPYEHRLTTPKGVNYYVKSTKFAQEYPPESEERATLEERVERDYFSVLRQNCHFELQRRQWGYIRETPHCDMLRKFELAN | 364 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu10g00889 | 364 | ProSitePatterns | Nt-dnaJ domain signature. | 157 | 176 | IPR018253 | - | |
Vimu10g00889 | 364 | Pfam | DnaJ domain | 116 | 177 | IPR001623 | - | |
Vimu10g00889 | 364 | MobiDBLite | consensus disorder prediction | 44 | 99 | - | - | |
Vimu10g00889 | 364 | SUPERFAMILY | Chaperone J-domain | 85 | 176 | IPR036869 | - | |
Vimu10g00889 | 364 | ProSiteProfiles | dnaJ domain profile. | 116 | 180 | IPR001623 | - | |
Vimu10g00889 | 364 | PANTHER | AT29763P-RELATED | 1 | 359 | - | - | |
Vimu10g00889 | 364 | FunFam | Chaperone protein dnaJ 49 | 112 | 227 | - | - | |
Vimu10g00889 | 364 | CDD | DnaJ | 116 | 169 | IPR001623 | - | |
Vimu10g00889 | 364 | MobiDBLite | consensus disorder prediction | 84 | 99 | - | - | |
Vimu10g00889 | 364 | SMART | dnaj_3 | 115 | 172 | IPR001623 | - | |
Vimu10g00889 | 364 | PRINTS | DnaJ domain signature | 136 | 151 | IPR001623 | - | |
Vimu10g00889 | 364 | PRINTS | DnaJ domain signature | 118 | 136 | IPR001623 | - | |
Vimu10g00889 | 364 | PRINTS | DnaJ domain signature | 152 | 172 | IPR001623 | - | |
Vimu10g00889 | 364 | Gene3D | DnaJ domain | 112 | 226 | IPR036869 | - | |
Vimu10g00889 | 364 | Pfam | Domain of unknown function (DUF1977) | 273 | 344 | IPR015399 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu10g00889 | Vimu-Chr10 | 7908698 | 7909792 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu10g00889 | 111 | 177 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT2G01710 | 40.845 | 1.30e-09 | 57.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu10g00889 | K09518 | - | gmx:100788812 | 588.186 |