Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00880 ATGAGCCACCGCAAGGAGGAATCACCGTCGGCGTTGCCTCTGCTCCGAAGCAGCGAAAGAGATGACGGGTCCGGGTCATGGTCAGGGTCAAAGGCATCGCTTACTGGCTCTGTGTTCAATTTATCTACAACGATCATCGGTGCTGGGATCATGGCCTTGCCGGCGGCCATGAAAGTTGTGGGTGTGAGTGTGGGCGTTGGTGCCATCATCTTCCTGGCCTTCCTCACGCACACCTCTCTCGAGATTCTTCTTAGATTCAGCAGAGCCGCCAAGGCCGCCACCTACGCCCACCTCATGGGGGATGCTTTTGGGAGCTCCGGAACCCTGCTCTTTCACGTGGCGGTGCTTCTCAACAACTTTGGGATACTTGTTGTTTACGTCATCATAATTGGTGATGTCTTGTCTGGAACTTCTTCCAGTGGAGTCCATCATTTCGGGGTGCTTGAAGGCTGGTTCGGCCAGTGCTTCTGGACAACCCGTACTTTCGTTCTGCTTCTCGCAACTCTCTTCGTATTTGCTCCATTGGCCTTCTTTAAGAGGATAGATTCGTTGAGACACAGTTCTGCTTTAGCTGTGGCTCTGGCCATTGTGTTTCTACTCATAACTGCGGGAATCACGTTCTTCAAATTGTTTAATGGCAGCATAGCCAGTCCCAGGATGCTTCCTAATATTACTGATGTTTCATCCATATGGAATCTCTTTACTGCCGCTCCAGTTCTTGTGACGGCATTTGTTTGTCACTACAATGTGCATACAATCGAAAATGAATTAGGAGACCCTTCCCTGATGCAACCGGTTATACGTGCATCACTGGTTCTGTGTTCTAGTATTTATATTCTTACAGCATTATTTGGATTTCTCCTATTTGGTGAGTCAACACTCGATGATGTGCTGGCCAACTTTGATACTGATCTGGGTATCCCTTATAGCAGTCTACTCAATGACATTGTTCGTATCAGCTACGCCCTCCACCTCATGCTTGTTTTCCCAGTTATCTTCTTCTCACTGCGCTTCAATTTGGACGATCTCCTCTTTCCTTCAGCTAGGTCCTTGGATTTAGATCATCGTAGGTTTGTCTTCATCACCATTGGACTCATCACTTTAATATATGTGGCTGCAAATTTTTTACCTACTATCTGGGATGTGTTTCAATTCACTGGAGCTACAGCCACCGTTTGCCTTGGGTTTATTTTCCCTGCTGCAATTTCCATCAGGGATCCTCATGGGATTTCAACAAAGAAGGATAAGGTTTTATCCATTGTGATGATTTTTCTTGCTGTGTTCTCAAATGTTGTGGCTATATACAGTAATGCTGAATCTTTGTTCAGAAAACGTGTGGATCCTCAGCAATGA 1353 0.4642 MSHRKEESPSALPLLRSSERDDGSGSWSGSKASLTGSVFNLSTTIIGAGIMALPAAMKVVGVSVGVGAIIFLAFLTHTSLEILLRFSRAAKAATYAHLMGDAFGSSGTLLFHVAVLLNNFGILVVYVIIIGDVLSGTSSSGVHHFGVLEGWFGQCFWTTRTFVLLLATLFVFAPLAFFKRIDSLRHSSALAVALAIVFLLITAGITFFKLFNGSIASPRMLPNITDVSSIWNLFTAAPVLVTAFVCHYNVHTIENELGDPSLMQPVIRASLVLCSSIYILTALFGFLLFGESTLDDVLANFDTDLGIPYSSLLNDIVRISYALHLMLVFPVIFFSLRFNLDDLLFPSARSLDLDHRRFVFITIGLITLIYVAANFLPTIWDVFQFTGATATVCLGFIFPAAISIRDPHGISTKKDKVLSIVMIFLAVFSNVVAIYSNAESLFRKRVDPQQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00880 450 PANTHER AMINO ACID TRANSPORTER 29 429 - -
Vimu10g00880 450 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g00880 450 Pfam Transmembrane amino acid transporter protein 31 438 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00880 Vimu-Chr10 7848477 7852310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00880 11 450 Amino Acid or Auxin Permease AAAP Family AT3G30390 61.451 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00880 K14207 - gmx:100778699 747.273