Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00872 ATGTCTTCCATGGCCTCCACCAACCGAGACGAATCCTCCGACAACGACAGCAACTGTTCCTCGGTAACCGCACCGGACTCCTCTCGCAGCTGGCTCAGCACCTTTAGCTTCCGCCGCTCCAACCGCACATCCCTGTCCCTCTCCACCGCCCAGACCACCTCAAGGGCTGCATGCGAGGCCATTCGCCGCCTCCGCCTCCACACCGGCGCCATCGGCCTAGACCACTTCCGTCTGCTGCGGCGGCTCGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCGGTGGTGGGGTTGCCGCAGTGCCTCTACGCCATGAAGGTGGTGGATAGAGAGGCGCTTGCCATACGGAAGAAGCTTCACCGAGCGGAGATGGAGAAGGAGATTCTGGCCATGATGGACCACCCCTTCTTGCCTACTCTATACGCTGCGTTTGAAGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGCGGAGACCTGTTCTCCGCTCGCCAACGCCTCCCCGAAAAACGCTTTACCATCTCATCAACTAAGTTTTATGCAGCAGAGACACTGGTGGCACTGGAGTATCTGCACATGAAGGGCATAGTGTACAGGGACTTGAAGCCGGAGAATGTGCTGGTGAGGGAGGACGGTCACATTATGCTATCGGATTTTGATCTGTGTCTGAGATGCGAGGTGATTCCAAAGCTGTTGAGAAGCAAAAGCAGATCAGAAGGCAGTGCGAAGACAAGAGCATCATCATGTGCTGGCCCAATGCAATCATGTTTCTCTGGCTCAAGCAAGAGAAAGAAGAAGGTGACAACAGTTATAAGGGAAAATGTGGAGGTGTGTGAGGTTGACACAGAGATGGTGGCAGAGCCCATCAATGCAAGGTCGAAGTCATTTGTGGGAACCCATGAGTACTTGGCACCCGAAGTGATTTCTGGGCAAGGACATGGTAGTGCAGTGGATTGGTGGACTTATGGGGTTTTCTTGTATGAAATGTTGTATGGGAGAACACCCTTCAAAGGTGAGAACAACGAGAAAACACTGACCAACATTCTGAAGCAGCCCTTGACTTTCCCTAGAATTGCAGTGAGTAGCAGCAAGGAGTATGAAGAGACGGTGAAGGTTCAAGACCTCATCAGCAAGCTCTTGGTGAAGAACCCAAAGAAGAGAATCGGATGCTGCATGGGCTCGGTTGAGATCAAGAGGCACGACTTCTTCAAGGGGGTCAACTGGGCTCTCATTAGATCAGTTAAACCACCTGATTTCCATGCTGATTTCAACAACATTAGGCGTAGAGTTTTGTTACAGAAACTAAGCAACAAAGACAAGGATCAACCCTTTCAGATCACTCATCGTTTTGACTACTTCTGA 1380 0.5203 MSSMASTNRDESSDNDSNCSSVTAPDSSRSWLSTFSFRRSNRTSLSLSTAQTTSRAACEAIRRLRLHTGAIGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCLYAMKVVDREALAIRKKLHRAEMEKEILAMMDHPFLPTLYAAFEASHYSCFVMDFCPGGDLFSARQRLPEKRFTISSTKFYAAETLVALEYLHMKGIVYRDLKPENVLVREDGHIMLSDFDLCLRCEVIPKLLRSKSRSEGSAKTRASSCAGPMQSCFSGSSKRKKKVTTVIRENVEVCEVDTEMVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTYGVFLYEMLYGRTPFKGENNEKTLTNILKQPLTFPRIAVSSSKEYEETVKVQDLISKLLVKNPKKRIGCCMGSVEIKRHDFFKGVNWALIRSVKPPDFHADFNNIRRRVLLQKLSNKDKDQPFQITHRFDYF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00872 459 ProSiteProfiles Protein kinase domain profile. 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00872 459 CDD STKc_phototropin_like 74 423 - -
Vimu10g00872 459 Pfam Protein kinase domain 299 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00872 459 Pfam Protein kinase domain 77 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00872 459 MobiDBLite consensus disorder prediction 1 28 - -
Vimu10g00872 459 FunFam serine/threonine-protein kinase D6PK-like 297 427 - -
Vimu10g00872 459 Gene3D Transferase(Phosphotransferase) domain 1 283 423 - -
Vimu10g00872 459 Gene3D Transferase(Phosphotransferase) domain 1 161 229 - -
Vimu10g00872 459 SMART serkin_6 76 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00872 459 PANTHER FLIPPASE KINASE 1-RELATED 13 427 - -
Vimu10g00872 459 Gene3D Phosphorylase Kinase; domain 1 74 160 - -
Vimu10g00872 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Vimu10g00872 459 FunFam Serine/threonine-protein kinase OXI1 165 233 - -
Vimu10g00872 459 SUPERFAMILY Protein kinase-like (PK-like) 61 430 IPR011009 -
Vimu10g00872 459 FunFam protein kinase PINOID 2 74 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00872 Vimu-Chr10 7743870 7745891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00872 14 459 AGC Kinase Gene Family AT2G26700 55.470 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu10g00872 Pkinase 1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00872 K08286 - gmx:100787216 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00872 10 7743870 7745891 Vimu10g00872 10 7743870 7745891 ECH
Vimu7g00990 7 9738647 9740474 Vimu10g00872 10 7743870 7745891 PCT