Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00868 ATGGCTTCTCCATGGGTTCAAGAGCTCCATATTCATCACTTCACCATTCCTGTAACCATTGATAGAATGTCTTCTGTTATGCCATCAAGGCCTATTCCTGTTAAACCAGGTGACACTTTATACCTTTCCAATCTCGATGACATGATTGGAGCTCGTGTTTTCACACCTACAGTGTATTTTTATCAGTTACACAGCACTGCCTCTTCCCAAAAACCTGTCACAAAAATACTACAATGTGCTCTCGCTGATGTTTTAGTGCCTTACTACCCTTTATCAGGCAGGCTCAGAGAGACGAAGAATGGTAAACTAGAAGTGTTTTTTGGACCGGAGCAAGGAGCACTCATTGTTGAGGCACGATCTGATGTTGCCTTGACTGAATTAGGAGACCTCACAGCTCCGAACCCGGCTTGGGAGCCTTTGATCTTCAAGTTTCCCAATGAAGAACAATACAAAGTGCTGGAAATGCCACTGGTCATTGCTCAGGTGACCCTTTTCCGATGCGGTGGCATTAGCCTTGGTTTGAGGCTTTGCCATTGCATCTGTGATGGAATGGGAGCCATGCAATTTCTGGGTGCATGGGCTGCTACTGCAAGAACAGGGATGCCGGTTATAGACCCTGTGCCTTGTTGGGACAGGGAAGTTTTCCGGCCACGTGACCCACCGGTGGTTAAATTTCCTCACTTGGAGTTTATGAGAATTGAAGAGGGCTCCAACCTCACAATGACACTGTGGCAAACAAAACCGGTTCAGAAGTGTTACAGGATAAAGCGGGAGTTCCAGAATCGCGTGAAAGCTCTTGCTCAGCCATATGACGCTGCAGGTTGCACAACTTTTGATGCCATGGCAGCTCATATATGGAGATCATGGGTGAAAGCTCTTGATGTGAGGCCACTAGATTACCAGCTTAGGTTAACTTTTTCGGTGAATGCTCGGCACAAGCTCAGAAAGCCAGCACTGAAAGAAGGGTTTTATGGAAATGTGGTGTGTGTTGCATGCACAAGAAGCACTGTCTCTGAGCTTGTGCATGGAGAGCTAGCTGAGACAACCCTTTTGGTTCGAGAGGCCAGACAGAGTGTGTCCGAGGAATATTTGAGATCTACAGTGGATTATGTCGAAGTGGATAGGCCAAGGCAACTTGAGTTTGGTGGGAAACTAACAATAACTCAATGGACAAGGTTTTCAATATACAAGTGTGCAGATTTTGGTTGGGGTAGGCCACTCTATGCTGGTCCTATAGATTTAACACCAACCCCTCAAGTTTGTGTCTTTCTTCCTGAAGGAGAAGCTGATTCCAGTGATGCTTCTATGATCGTCTGCATATGCTTGCCTGAGTCTGCTGCTCAAAAGTTTACACAAGCTTTGTTGCTCCATTCTGATTTTTGA 1383 0.4599 MASPWVQELHIHHFTIPVTIDRMSSVMPSRPIPVKPGDTLYLSNLDDMIGARVFTPTVYFYQLHSTASSQKPVTKILQCALADVLVPYYPLSGRLRETKNGKLEVFFGPEQGALIVEARSDVALTELGDLTAPNPAWEPLIFKFPNEEQYKVLEMPLVIAQVTLFRCGGISLGLRLCHCICDGMGAMQFLGAWAATARTGMPVIDPVPCWDREVFRPRDPPVVKFPHLEFMRIEEGSNLTMTLWQTKPVQKCYRIKREFQNRVKALAQPYDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARHKLRKPALKEGFYGNVVCVACTRSTVSELVHGELAETTLLVREARQSVSEEYLRSTVDYVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADSSDASMIVCICLPESAAQKFTQALLLHSDF 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00868 460 Gene3D - 15 232 IPR023213 -
Vimu10g00868 460 Gene3D - 238 454 IPR023213 -
Vimu10g00868 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 32 450 - -
Vimu10g00868 460 Pfam Transferase family 17 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00868 Vimu-Chr10 7696076 7697458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00868 30 455 Monolignol Biosynthesis Gene Families AT5G48930 30.435 5.41e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00868 K15400 - gmx:100802814 845.114