Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00860 ATGGCATCTCAAGCAGAACTTAGCATGGAGTACAAGCCCTACACCTATTCCACACTGCTCAAATCCTTTGCAGACCAAACTGATCAGACCTACAAGCTCCAAGACTTTCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGATGCTTCAAGGCAGCAGCTACAGACCTTCAGATCAAACCAAGGTACAAGGCCAATTCTGGAAGAATTCATACCCATAAAGCATCCAAATTCTCAAGAAAGCACTGAGAAGGCATCAAACATATCAGACAAGGCGAGTTGGATGACATCAGCTCAACTATGGAGCCAGGCAAGCGAAGGAACCAAACCAAAATCCACAATTACATCACCAAAAGAAAGTGCTGATACAGGGTTTAGCGTGAGCCCTAGGCTAGCCCTAGACAGCAAACATAGGAATGGAGGAGCCTTTTTACCATTCTCAAAAGAGAGAAACTCATACCAAGGAATAGGGGATCTTCCTGAGTTAGGCCTTGCCTCTTCTGAGAGTGAAATGGAGGTGAAGAAATGTGAAGAGACAGAGAAATGCTCCAAAAGGGAGAATTCAGGCAAAGGTGGGAGTTTTGAAGGGATTATTGATCAGGGAAGAGTTGCTGCAATTGCAACCGAGGCACAAACAACCACCACAACTGGCCGGAAAGCAAGAAGGTGTTGGTCACCGGACTTGCACCGTCGATTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTTGACGGTCTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCAGCCCAAGCCTACATGCAGGAGCACCAACACCACAAGTTGTAGTCCTTGGAGGAATTTGGGTGCCGCCGGAATATGCCACTGCTGCCGCACACTCCGATGGCACCAGCTTCTACGGCCCACATCCCACCTCACACGTGCCACCGCCACACTACTGTGCAGCCACCCCGGTGTCTCAAGAGTTCTACAACTCAGCTCCGTCACTGTCGTTTCCACCACCACACGACCACACTCTCCATCAACACCATTTTCACATGTACAAGACAGCACCACACACCCATAGCTCTCCAGAATCAGATGTTCGGAGCGGTGGCGACCGATCTGAGAGCATCGAGGATGGGAAGTCGGAGAGTGGTAGCTGGAAAGGAAATGGTGAGAAGAAAGGTTTGGCTGCACTGAGAGATCAAGAAGGGGAAGACAGCACTGGGAGTGAGATCACACTTAGATTCTAG 1338 0.4895 MASQAELSMEYKPYTYSTLLKSFADQTDQTYKLQDFLSRLEEERLKIDAFKRELPLCMQLLTNAVDASRQQLQTFRSNQGTRPILEEFIPIKHPNSQESTEKASNISDKASWMTSAQLWSQASEGTKPKSTITSPKESADTGFSVSPRLALDSKHRNGGAFLPFSKERNSYQGIGDLPELGLASSESEMEVKKCEETEKCSKRENSGKGGSFEGIIDQGRVAAIATEAQTTTTTGRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSLHAGAPTPQVVVLGGIWVPPEYATAAAHSDGTSFYGPHPTSHVPPPHYCAATPVSQEFYNSAPSLSFPPPHDHTLHQHHFHMYKTAPHTHSSPESDVRSGGDRSESIEDGKSESGSWKGNGEKKGLAALRDQEGEDSTGSEITLRF 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00860 445 MobiDBLite consensus disorder prediction 121 143 - -
Vimu10g00860 445 Gene3D - 236 294 - -
Vimu10g00860 445 MobiDBLite consensus disorder prediction 394 439 - -
Vimu10g00860 445 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 20 417 IPR044787 GO:0003700|GO:0006355
Vimu10g00860 445 MobiDBLite consensus disorder prediction 384 445 - -
Vimu10g00860 445 Coils Coil 33 53 - -
Vimu10g00860 445 FunFam Myb family transcription factor 236 294 - -
Vimu10g00860 445 SUPERFAMILY Homeodomain-like 234 295 IPR009057 -
Vimu10g00860 445 NCBIfam myb-like DNA-binding domain, SHAQKYF class 237 292 IPR006447 GO:0003677
Vimu10g00860 445 MobiDBLite consensus disorder prediction 121 141 - -
Vimu10g00860 445 Pfam Myb-like DNA-binding domain 239 290 IPR001005 -
Vimu10g00860 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 234 294 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00860 Vimu-Chr10 7646976 7649535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00860 1 445 G2-like Transcription Factor Family AT2G03500 50.000 7.17e-123 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu10g00860 Myb_DNA-binding 9.5e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00860 - - gmx:100815048 735.717