Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00859 ATGAAGGATCCAGAGGAGCACCAAGTGAAGTCTAGAAGGCCTCTTCCAAAACCCACAGAACGTAGAAGAAGATGCAGGAGAAGGAGCCAGTGCAAGCCAGAGAAATTACAAGAAACAGAACTTCATCCACAGCTTCCTTCCTCTGCCACTCCCAAGAGTCTTATGTTTCATCAAAGGCCTGGCTATGGCCAACTCGGGACCAAGTGTCTCGTCAAAGCTAACCACTTCCTTGCTGATATATCTGTATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTCACTTGTCGAAAAACAAGCAAGGCTATCATAGCAGAGTTGGTGAGGGTTCACAGGAACACTGACTTAGCCACGAGGCTCCCTGTGTATGATGGAAGAAGAAACCTTTACACTGCTGCTTTGCTTCCTTTTACATACAAAGAATTCAATGTAACGTTGAGTGAGGATGATGATGCCACCAGTGGTACCAGGGAAAGAAAGTTTAAGGTGGTAATCAAGTTCGCAACTCATGTTAGCATGCATCAGCTACGTGACCTTCTTAGTGGAAAGCAAGTGGACAATCCACAGGAAGCTCTAACGGTCTTTGATATTGTGTTAAGGGAGCTTGCGGCTCAGAGTTATGTGTCAATTGGGAGGTTTCTTTATTCTCCGGATGTAAGAAAACCACAGCAGTTGGGTGGTGGCCTTGAATCGTGGAGGGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCTTTTATTGAACCACTACCTGTGATTGATTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAGCCTTTGTCGGATGCTGATCGTGTCAAGATAAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGTAGATTATTTTCAAGAAATGTATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGCCAAAGGAAGGTGAACTATTTGCCCATGGAGGCATGCAAAATAGTTGAGGGGCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGTTCTCATGCCAGAGACCCCGTGAACAAGAGGCAGACATTTTACAGACAATGCAACAAAACAATTACGACAATAATCCATATGCAAAAGAGTTTGGCATCAGCATAGATAACAAGCTTGCATCTGTTGAGGCTCGGGTTCTTCCACCTCCTTGGTTGAAATATCACGACACTGGAAGAGAAAAAGAATACTTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTAATAAATGGAAGTACTGTAAGATATTGGGCATGTATCAATTTCTCTCGAAGTGTACAGGAAAGTACAGCTCGTGGATTTTGTCAACAGTTAGTTCAGATGTGCCAAATATCAGGCATGGAATTCAGTCAGGAGCCTGTGATTCCTATATATTCTGCAAGACCAGATCAGGTAAAGAAGGCTTTGAATTATGTACACTCTGCTGCTATGGATAAGCTTTGTGGGAAAGAGCTAGAGTTACTGATTGCCATTCTTCCAGACAATAATGGCTCTCTGTACGATTCCTTTGTAAACATGGTATCAAGAAAAAAAGAGATGCTTAGCATTTCCCCATTATCTATATTTCAGTTTATCTGTGGAGAAAATTATTTCACACTTGCATTAAAGAAACAAACTCTTCGTTCAGGTGATCTCAAAAGGATTTGCGAAACAGATCTGGGGTTGATCTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAATACCTTGCAAATGTGGCACTTAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTGCTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTCAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACGCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGGTTGGTCTGTGCTCAGCCTCATCGAGAAGAACTTATTCAAGATCTTTTCAGATCTTGGAAAGATCCACAGAGGGGTGTAACATATGGTGGTATGATCAGGGAGCTTTTACTATCATTCAAGAAGGCAACGGGACAAAAACCATTGAGAATAATCTTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGCAAGGCTTGTGCATCTTTGGAACCTAGTTACCAGCCACCAGTAACATTTGTAGTAGTTCAAAAGCGGCATCACACTAGACTCTTTGCAAACAATCATGATGACAGAAATAGTACTGATAAGAGTGGAAATATCTTACCTGGAACTGTGGTAGATTCTAAGATCTGTCATCCTTCTGAATTCGACTTCTACTTATGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGACGAGAACAATTTCACTGCAGATGAGATTCAGTCTCTTACCAACAATTTATGCTACACGGCTCGATTCTACATGGAACCTGATGTTGTTGAGATTACCAAACTGCGAGGAACAAGGTCGAAAGAGGGGCCAGTTCGGCCACTGCCTGCTCTGAAAGAGAAGGTGAAAAATGTTATGTTTTACTGTTGA 2784 0.417 MKDPEEHQVKSRRPLPKPTERRRRCRRRSQCKPEKLQETELHPQLPSSATPKSLMFHQRPGYGQLGTKCLVKANHFLADISVSDLSHYNVKITPEVTCRKTSKAIIAELVRVHRNTDLATRLPVYDGRRNLYTAALLPFTYKEFNVTLSEDDDATSGTRERKFKVVIKFATHVSMHQLRDLLSGKQVDNPQEALTVFDIVLRELAAQSYVSIGRFLYSPDVRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVEGQRYTKGLNEKQITSLLKFSCQRPREQEADILQTMQQNNYDNNPYAKEFGISIDNKLASVEARVLPPPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQEPVIPIYSARPDQVKKALNYVHSAAMDKLCGKELELLIAILPDNNGSLYDSFVNMVSRKKEMLSISPLSIFQFICGENYFTLALKKQTLRSGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRSWKDPQRGVTYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTARFYMEPDVVEITKLRGTRSKEGPVRPLPALKEKVKNVMFYC 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00859 927 SMART PAZ_2_a_3 267 399 IPR003100 GO:0005515
Vimu10g00859 927 MobiDBLite consensus disorder prediction 1 15 - -
Vimu10g00859 927 Pfam Piwi domain 605 886 IPR003165 GO:0003676
Vimu10g00859 927 Gene3D - 593 658 - -
Vimu10g00859 927 ProSiteProfiles Piwi domain profile. 594 884 IPR003165 GO:0003676
Vimu10g00859 927 Pfam Mid domain of argonaute 460 537 IPR032473 -
Vimu10g00859 927 Pfam PAZ domain 267 393 IPR003100 GO:0005515
Vimu10g00859 927 CDD PAZ_argonaute_like 262 376 - -
Vimu10g00859 927 MobiDBLite consensus disorder prediction 16 30 - -
Vimu10g00859 927 MobiDBLite consensus disorder prediction 1 57 - -
Vimu10g00859 927 Gene3D - 441 584 - -
Vimu10g00859 927 FunFam protein argonaute 10-like 662 886 - -
Vimu10g00859 927 ProSiteProfiles PAZ domain profile. 263 377 IPR003100 GO:0005515
Vimu10g00859 927 SUPERFAMILY Ribonuclease H-like 541 884 IPR012337 -
Vimu10g00859 927 SMART DUF1785_2 210 262 IPR014811 -
Vimu10g00859 927 Gene3D paz domain 257 381 - -
Vimu10g00859 927 FunFam Protein argonaute-2 256 382 - -
Vimu10g00859 927 CDD Piwi_ago-like 421 885 IPR045246 -
Vimu10g00859 927 SMART Piwi_a_2 585 910 IPR003165 GO:0003676
Vimu10g00859 927 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 51 887 - -
Vimu10g00859 927 Pfam Argonaute linker 1 domain 211 260 IPR014811 -
Vimu10g00859 927 SUPERFAMILY PAZ domain 258 418 IPR036085 GO:0005515
Vimu10g00859 927 Gene3D - 662 927 IPR036397 GO:0003676
Vimu10g00859 927 Pfam N-terminal domain of argonaute 68 201 IPR032474 -
Vimu10g00859 927 Pfam Argonaute linker 2 domain 405 449 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00859 Vimu-Chr10 7617806 7624194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00859 52 927 Eukaryotic Initiation Factors Gene Family AT5G43810 68.798 0.0 1316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00859 K11593 - gmx:100810235 1647.1