Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00841 ATGGACGAAAGGAGACTGAATATAATCTCTGCTATATCAGTGATTGCACTGGTTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGGCTTCTTCCTTATATTTGGTGCCGGTGTTGCTGTTATTCTTGCAGTCTTTGCTTATGTTCTCATCAGCATAAGGTTCAACCGCAGGAGGAGGCTATTGGAGTCACAGTTGAAATCTGAAGGCCGAGAACTTCGCATGGAGTACAGTTTCTTGAAGAAAGTTGCCGGCGTTCCCATTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACTGATGGGTTTCAGGCACTGATTGGAAGAGGTGCTTCTGCTTCAGTTTTCAAAGGTATTCTCAATGATGGCACTTCGGTTGCCGTGAAACGAATCGATGGAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCAATAGCTAGTGTGCACCATGTGAACCTGGTGAGGCTGTTGGGCTACTGTAATGCTCCGACAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCTTTGGACTGTTGGATTTTTCCCAAAAGGTTATCTCAGAGGCGCCTTGGTGGGTGCTTGCCGTGGAATTTAAGGTACAAAGTTGCCATCGATGTTGCCAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAAGATCTTGCACCTTGACGTAAAGCCAGGAAATATATTGTTGGACGAGAATTATAGAGCAGTTGTTTCAGATTTTGGTTTGGCAAAGCTTGTTGGCAAGGATGAAAGCCAAAAGGTTGTGTCTGCCATTAGAGGAACAAGAGGGTACTTGGCACCTGAGTGGCTCTTAGAGCAAGGTATTTCGGATAAGACAGACATATATAGTTATGGGATGGTTCTTTTAGAGATTATTGGAGGCAGAAAAAACGTTTGCTTCGTGGATGATGTAAAGTCCAAGTCCAAAAGAAAATGCCGGTACTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGTAAAGTCATGGAAATTGTTGATCCTAGGTTGTTGGAAGGTGGAGGTGTTGATGAGAAGCAGGTAAAGACACTGGTTTATGTTGCTTTGTGGTGTGTGCAAGAGAAGCCAAGATCAAGGCCTAGCATGGCCCAAGTTGTTGATATGCTTGAAGGGCGTGTGAGGGTAGAACTTCCACCTGATACCAGAATGGTTCTTGTTGATTTTCTGTGTGTGGATGACAGTGCAACAGATAGCAGTAGCTTGCAAAGGTTGGACTTTATGTCGAATCGAAGAATACAAAGCGATGTGGAGTGTTCATCTACCTACTCCCATGCTACCACTGTTTTTTCTGGAAGATAG 1353 0.4427 MDERRLNIISAISVIALVILIIVARVTLKLSKGFFLIFGAGVAVILAVFAYVLISIRFNRRRRLLESQLKSEGRELRMEYSFLKKVAGVPIKFRYKELEEATDGFQALIGRGASASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRYLVYEYVSNGSLDCWIFPKRLSQRRLGGCLPWNLRYKVAIDVAKGLAYLHHDCRSKILHLDVKPGNILLDENYRAVVSDFGLAKLVGKDESQKVVSAIRGTRGYLAPEWLLEQGISDKTDIYSYGMVLLEIIGGRKNVCFVDDVKSKSKRKCRYFPKIVNEKVREGKVMEIVDPRLLEGGGVDEKQVKTLVYVALWCVQEKPRSRPSMAQVVDMLEGRVRVELPPDTRMVLVDFLCVDDSATDSSSLQRLDFMSNRRIQSDVECSSTYSHATTVFSGR 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00841 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Vimu10g00841 450 FunFam Putative receptor-like protein kinase 70 178 - -
Vimu10g00841 450 Gene3D Transferase(Phosphotransferase) domain 1 179 395 - -
Vimu10g00841 450 SUPERFAMILY Protein kinase-like (PK-like) 84 388 IPR011009 -
Vimu10g00841 450 ProSiteProfiles Protein kinase domain profile. 103 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00841 450 PANTHER OS07G0415500 PROTEIN 43 399 - -
Vimu10g00841 450 FunFam Putative receptor-like protein kinase 179 395 - -
Vimu10g00841 450 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Vimu10g00841 450 Pfam Protein kinase domain 108 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00841 450 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Vimu10g00841 450 SMART serkin_6 103 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00841 Vimu-Chr10 7493161 7494513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00841 1 399 Receptor kinase-like Gene Family AT5G20050 64.179 4.28e-176 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu10g00841 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00841 - - vra:106757544 858.596