Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00826 ATGTTTTTCCAAAGAGATAGAGAAAAAGTAGTTTCTTCGTTCGGCTGTCGCAAAACACTTGAAGGAGCAAAAGTCGCAGAAGCAACCATGGCTGAAGCAGAAGACAAAGATACCAGCTCGCCGGAGCATGAAAACCAAACCAAAATTAACAAGAAGAAGCTTCGCAAGAGAAAAAGGCCAAATAAGAGCGAGAATAAACAAGAGGAGAAAAACGATGCGAAGATTGGTAGCACGCGGACACAAACCGAAGATGCAGAAGAAGAGGAAAAAGAAGAGACAGAGGTGAAAACTAACGATTCATGTGGAATCATGAGTTCCGAGTTTTTCTCCTCTCTTACCTTGTCCGAAGCTACTTCCAATGCCATTGCGGACATGGGCTTCGACCGTATGACTCAGATTCAAGCGCGGGCGATTCCGCCGCTACTGATCGGAAAGGACGTGCTGGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGCTGTACAACGCTCAGTTCACGCCGCTCAACGGAACGGGTGTTGTTGTGATATGTCCGACGAGAGAACTCGCGATTCAGACGCACGCCGTGGCGAAGGAACTGCTGAAGTACCATTCGCAAACGCTCGGGTTGGTGATTGGGGGTGCGGGGCGAAAGGGAGAGGCTGAGCGCATTGTGAAAGGGGTAAACCTATTGGTGGCGACGCCGGGTAGGCTCCTCGATCATCTTCAAAACACAAGGGGGTTCATATATAAAAACTTGAAGTGCCTCATGGTCGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATAATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCCACACAGACAAAGAAGGTTGAGGATCTTGCCCGCTTATCTTTTCAGACAACTCCTATCTTTATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAACAGGGTTATGTTGTTGTTCCCTGCGCTAAGCGTTTTGTTGTTCTCTACTCATTCTTGAGAAGATATCAATCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCGGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAACAACATGCCCGTACTTCTACGTTCTTCAACTTCTGCAAAGCTGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGATTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCAAAGGGAAATGCTTTACTTTTTCTGATTCCTGAAGAATTGAAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATCATAAGAAGCTGGCAAATGTACAATCTCATCTGGAGAAGTTGGTAGCTGGCATTTATCATTTGAACAATATGGCTAAAGAGGCATATCGGTCATATATATTAGCATATAATGCACATTCTATGAAAGATATATTCAATGTTCACCGCCTAGATTTACTGGCTGTTGCTACTTCATTTTGTTTTTCCAACCCACCGAAGGTGAATCTAAACATAGATAGCAGTGCTTCAAAGCATAGGAAGAAAGTACGCAAACTGTAA 1704 0.4431 MFFQRDREKVVSSFGCRKTLEGAKVAEATMAEAEDKDTSSPEHENQTKINKKKLRKRKRPNKSENKQEEKNDAKIGSTRTQTEDAEEEEKEETEVKTNDSCGIMSSEFFSSLTLSEATSNAIADMGFDRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPAVELLYNAQFTPLNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGAGRKGEAERIVKGVNLLVATPGRLLDHLQNTRGFIYKNLKCLMVDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIFIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTSTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIPEELKFLHYLKAAKVPVKEYAFDHKKLANVQSHLEKLVAGIYHLNNMAKEAYRSYILAYNAHSMKDIFNVHRLDLLAVATSFCFSNPPKVNLNIDSSASKHRKKVRKL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00826 567 Pfam Domain of unknown function (DUF4217) 489 549 IPR025313 -
Vimu10g00826 567 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Vimu10g00826 567 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 497 IPR001650 -
Vimu10g00826 567 Gene3D - 324 564 IPR027417 -
Vimu10g00826 567 Gene3D - 27 317 IPR027417 -
Vimu10g00826 567 SMART DUF4217_3 488 551 IPR025313 -
Vimu10g00826 567 MobiDBLite consensus disorder prediction 61 84 - -
Vimu10g00826 567 PANTHER RNA HELICASE 62 488 - -
Vimu10g00826 567 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Vimu10g00826 567 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Vimu10g00826 567 Pfam Helicase conserved C-terminal domain 343 447 IPR001650 -
Vimu10g00826 567 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Vimu10g00826 567 MobiDBLite consensus disorder prediction 29 98 - -
Vimu10g00826 567 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Vimu10g00826 567 MobiDBLite consensus disorder prediction 29 49 - -
Vimu10g00826 567 FunFam RNA helicase 324 554 - -
Vimu10g00826 567 SMART ultradead3 126 331 IPR014001 -
Vimu10g00826 567 SMART helicmild6 367 448 IPR001650 -
Vimu10g00826 567 CDD SF2_C_DEAD 328 458 - -
Vimu10g00826 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 469 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00826 Vimu-Chr10 7337052 7342751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00826 107 466 Eukaryotic Initiation Factors Gene Family AT3G13920 31.608 3.53e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00826 K13179 - gmx:100798290 924.465