Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00823 ATGGAGCCTATGGACATAGTTGGAAAGGCCAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACGAAAATTATTAAGGAGATGCTGCCCCCGGACGTGCGTGTGGCCAGAGATGCGCAGGATTTGTTGATCGAATGTTGTGTCGAGTTTATAAACCTTGTCTCATCTGAGTCCAATGAAGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCGGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGTGACTACATCGAGGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACAATGTGGAGTTGCCAGCCTGTCTTAATGTCGTCTGTCGTAGGGGAGAATCTGCAGCAAGACTCTTTGAAAGGTGCCAAGTGGAGCAACAGGGCTGAGATGACAGAGGAAGAAGCATTGGCTGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCTGACGCTGACCAAAGTTTAGAGAGCTAA 522 0.477 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALGVLGFGDYIEEVYAAYEQHKLETMWSCQPVLMSSVVGENLQQDSLKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00823 173 MobiDBLite consensus disorder prediction 154 173 - -
Vimu10g00823 173 PANTHER PROTEIN DR1 HOMOLOG 122 172 IPR044255 -
Vimu10g00823 173 Gene3D Histone, subunit A 5 160 IPR009072 GO:0046982
Vimu10g00823 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vimu10g00823 173 Coils Coil 132 152 - -
Vimu10g00823 173 FunFam Negative cofactor 2 beta 6 160 - -
Vimu10g00823 173 SUPERFAMILY Histone-fold 12 160 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00823 Vimu-Chr10 7314726 7317693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00823 1 169 CCAAT-DR1 Transcription Factor Family AT5G23090 73.684 3.01e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu10g00823 CBFD_NFYB_HMF 9.8e-23 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00823 K21751 - gmx:547635 291.582