Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00812 ATGATGATGGCGAGTTCAAGAGAAGGTCAACAAGCCAAGCAAGAAGGTGGCGCCATTAATATTGACAAGTTTTCCAAGGCATCCTCCAGTACAAGACAATGGTCAGCGTTTAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTCGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATAAGAGGGTTGAGAGACAGAAGGATTAGGCTCTCAGTGCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTGAACCAACCAAGCAAAGTGATAGATTGGTTGCTTGAAGCAACTAAACTAGACATTGACAAGCTCCCTCCACTTCAATTCCCTCAGGGTTTTGGTCAATTTCATCATCCACAAACCCTACTCCCCTTTCATGATTCAAGCTCCTCTCAGCTTTCTCTTGGACCCTTCGGTGAATCTAGCTCCTCATTTGTAAGGGATGGGGGAGTTCAAAACTCCATGGCAAAGTCAAGGTATTGGGACAGCATAGATTCAATATCAAGATTGAAAGGCAAGGAAGGTGAAAAGGGCAAGTGGGTCAAAACAAACGAGGAAGAAAATCAAGAAGATGATGTTGTTGGAAGCTACAGCAACTTACATGCATCTACTCAGAGGCTTTTCCCTATGGGTAGTGGTACCACCACTACTCACTCACTTTTACCTGGTTTGTTAAACAATACTATGCCATATAACCCCTACAACTCTGAGCCTTCTGGTTTGTCGTTATCCCAATTTGGAGGCCATGGCTTGTTTCCTTCCCAGCAGGTAGATCCCGGTCCAAGCAGTGCAAATGGTGTTCAATTCCCATCTTCTTTGGCATTACCTTCATCTGCTTCTCAATTTTTCCTTGGTTCATCTTCTGCTACACCACCAATGTTCACTACCTATGCTCCATTTCTTACACCCTCACTTGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGCTTCTCAAATCTTGCCTCATCCTCTCATTCCATCTCTTCACTCCTTGAATCCACATGTCAGACCCTTTCCAGCAACACCCTTTAGTTCAAAGCTTTTGGAGTCAGATAGCATCCGCAGCCAACATGATAAGGATAGCTCTTCTTGA 1122 0.4421 MMMASSREGQQAKQEGGAINIDKFSKASSSTRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVIDWLLEATKLDIDKLPPLQFPQGFGQFHHPQTLLPFHDSSSSQLSLGPFGESSSSFVRDGGVQNSMAKSRYWDSIDSISRLKGKEGEKGKWVKTNEEENQEDDVVGSYSNLHASTQRLFPMGSGTTTTHSLLPGLLNNTMPYNPYNSEPSGLSLSQFGGHGLFPSQQVDPGPSSANGVQFPSSLALPSSASQFFLGSSSATPPMFTTYAPFLTPSLDNDPRQFNHIQFLNSASQILPHPLIPSLHSLNPHVRPFPATPFSSKLLESDSIRSQHDKDSSS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00812 373 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 281 IPR005333 GO:0003700
Vimu10g00812 373 Pfam TCP family transcription factor 51 173 IPR017887 -
Vimu10g00812 373 ProSiteProfiles TCP domain profile. 51 109 IPR017887 -
Vimu10g00812 373 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00812 Vimu-Chr10 7167394 7168515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00812 35 373 TCP Transcription Factor Family AT5G60970 40.625 1.08e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu10g00812 TCP 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00812 - - gmx:100788984 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00868 7 8507694 8508788 Vimu10g00812 10 7167394 7168515 PCT