Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00810 ATGGCAGCAAAACTCCTGCAATCTTTAGCAGACGAAAACCCAGATCTGCAGAAGCAGATAGGATGCATGACTGGGATTTTTCAGCTTTTTGATCGTCACCATGCTCTCACGGCTCGCCGCATTGCCCAGAAGAGGCTTCCTTCTGGTAATTCGCACTTCAATTATGGAAGCTTGGAAAGAGATTCTAATAATATACACCATCGCCAAACAACAACTGATACTAGCTTAAACAAGGGTGTGAATGAGAGGCAGAGAATTTCAACCGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCATCAGTGTCCTCTTTGGACTGCAAGGCTGAAGCAGAGGCTCCATTTGACCGGATTCTTTTTCCCGAAACTCCTTCAAGGGATGCAGCCATGAACCAATCAACCGTCTCTTCCCATTTTGGATGTAACTCCCTTGACCTAAGGGATGTGGTGAAAGATTCTATGTATAGGGAAGCCCGAGGGCTGTCAGTGAAGACTACAGACAAAGAAGAATCTGCCATTAACACCATGAAGCACAGGGATTCACCACGTCCTATGCAGTTGCCCAAATCTGTTGATGGATCTTATAGAGGTGGAATAGATGGAAAACAAAGTGTGCCAATTGATTTAAAGGAGTCAATCCGAGTCCTTGCTAAACTTAGAGAAGCACCTTGGTATTATGCAGAAACTAAAGAACTTCCAAGATCATCACATGATGTAAAAGATGGACCCTGGCATTCGAACTCAAAGGATGCTTCTTGGTTTGGTTATGAAGGAAAAGAAATAAGTCGTTTGTCTTTTGAATCACGAGAGACCATCAAATCCACACCAAAACTAAAAGAGTTTCCTAGACTTTCACTGGATAGTAAGGAAGGTTCATTACGCCCTTATAGTTCTGATTCAGCTACTCGCCCATCAAGAAACATTTACACTGGCACACCCGCATCAAATGACAAATTCTCTACCCTACAACAGCCTTCAACAATCCCCAGTCGTCCACCTGGTGTTGTGGCAAAATTAATGGGCTTGGAAGCATTACCAGATTCCTCTTTGGCTGGTGACACTCAACCAAGTTCAACTGAAACTTACTCAGCACAAGATAATAGTCAGTTTCCAAGATCATCAAAACAAGGACTCACCAGGCCACTCCGAGTTTCTCATTCTCCAAAAGTTTCTTTGAAAGACCCAACTTCCCCACGGCGAAAAAATCCTGATCTAGTTATGAAACCCATCTCAAGTTCAAGGTTTCCCATTGAACCAGCTCCATGGAAGCAGCAAGATGGAAATCGAAGCTCCCAGAAACTGAATTTAAGGGGTGTAAAAGCTCCAGTGAGAGCACCAGATACCTTTCCTTCAGTTTATAGCGAGATAGAGAAGAGATTGAAGGATCTTGAATTCAAACAATCTGGAAGGGATCTCAGAGCATTAAAACAGATACTTGAAGCAATGCAAGAAAAGGGACTATTAGAGAGCAGAAAAGAAGAACAAGCTCCAAATGTTATTGGAAGTCAAAATGACTATGAACAAAGAGCTACCAGCCAAGATCAGAATACCAGGTCATTAAGGCAACAAAACTCTCAGAGAAACAATTTTCTTTCATCCACAATCAAGGGAACTGAATCAGCAAGGGCTTTTGAATCCCCAATAGTGATAATGAAGCCAGCAAAGCTTGTTGAGAAAACTTCAATTCCTGCTTCTTCAGTCATTCCGATTGGTGGTCTTTCTGTTTCCCAGAAACACCAGAATGCTGGTGTATATTTAGATAATAGAACCAGTACATCTGCCACTCGAGTAGCAAAAGATCAGTCTCCCAAGAACATTCATCGGGATGCTTCTGCCAGTTCCATTGATAAGAAAGCAAATGGTAGTAAGACTACTAGATCTGCACAATCTCAATCTAGGTCTCAGCAACATCTAAAAGAAAATAGCCAAAGTTCTGTGAAGCACTCAGGAACCGTGAGCCCTAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCCACCTGCTCCACCATCAGATTCAACCAAACTCAGAAGGCCATCTGGTAAGAAGGCAACAGAGTCAGGTTCACCAGGTGGGAAACAAAGACCCAAAGCCCTCAACTCGCGGCATAATGATGAGCAACTGAGTGAGATAAGCAACGAATCAAGAAGTTTAAGTTGCCTGGGGGATGAAATTTCTTTGCAATCAGATAGTTTAACTGTCAACTCAAAGATGGAAGTGGAAGTCACAAGTAGTTTAAAGTCTGTTGAAATTGATGACAGCCAAAGTCCATCTTTGAAGGCTGTGAAGCAATTGATTTCAGAGACAGCGCAAAAAAAGTCAACTCCAAGATTGGATGAGGATGAGTCAGTTGCAGAACTTGGAGGAGATGCACCGGAACATCCAAGTCCTATCTCAGTTCTTGATGGATCGGTGTACAGAGATGATGTGCCATCCCCAGTAAAGCAGATATCTGAAGATTCAAAAGGTGATGATGCTCAAGAATCCAAAGAAAATGAGATTAAAGATCAATGGAACCCATCAGAAAGCCTTTCATTTCACAGCATGGGATCAGGAGAGATCAATCGAAAAAAATTACAAAACATAGACCACCTTGTTCAGAAGCTTCGACGGCTGAACTCCAGTCACGATGAAGCTAGAATTGACTACATTGCTTCCCTATGTGAAAACTCAAATCCAGATCACAGATACATCTCTGAAATATTATTAGCTTCAGGCCTCTTACTCAGAGATTTGAGTTCCGAGTTGCTGACATTTCAACTTCACTCTTCGGGTAATCCCATTAACCCTGAGTTATTCCTTGTCTTGGAACAGACCAAGGCAAGTAGTTTGCTTTCAAAAGAAGAAAGCACCCCCGAAAAAGATTCTAACATGAAGCTGAACAAAGAGAAATTTCACAGGAAATTCATCTTTGATTCTGTGAATGAGATTCTTGGTACCAAATTAGGCTCATCTCCAGAGCCATGGTTTCTTCCTAACAGTAACAGACTCACAAAGAAAACCTTGAGTGCTCAAAAGCTCCTCAAAGAACTATGCTTTGAGATTGAAAAAATTCAAGCCAAGAAGCCAGAATGCTGCTTAGAAGATGAAGATGATGATCTGAAAAGTATGCTGTGTCAAGATGTTATGCTTGGCTCAGAAAGTTGGACAGATTTTCATGGTTATTTACCTGGGATTGTGTTGGATGTTGAGAGACTTATATTCAAAGACTTGGTTGATGAAGTTGTGATTGGTGAATCATCTGGTTTGCGAGTCAAGCCATCAGTTAGGCGCAGGAAGCTATTTGGAAAGTAG 3303 0.4187 MAAKLLQSLADENPDLQKQIGCMTGIFQLFDRHHALTARRIAQKRLPSGNSHFNYGSLERDSNNIHHRQTTTDTSLNKGVNERQRISTESSRASFSSCSSSVSSLDCKAEAEAPFDRILFPETPSRDAAMNQSTVSSHFGCNSLDLRDVVKDSMYREARGLSVKTTDKEESAINTMKHRDSPRPMQLPKSVDGSYRGGIDGKQSVPIDLKESIRVLAKLREAPWYYAETKELPRSSHDVKDGPWHSNSKDASWFGYEGKEISRLSFESRETIKSTPKLKEFPRLSLDSKEGSLRPYSSDSATRPSRNIYTGTPASNDKFSTLQQPSTIPSRPPGVVAKLMGLEALPDSSLAGDTQPSSTETYSAQDNSQFPRSSKQGLTRPLRVSHSPKVSLKDPTSPRRKNPDLVMKPISSSRFPIEPAPWKQQDGNRSSQKLNLRGVKAPVRAPDTFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQAPNVIGSQNDYEQRATSQDQNTRSLRQQNSQRNNFLSSTIKGTESARAFESPIVIMKPAKLVEKTSIPASSVIPIGGLSVSQKHQNAGVYLDNRTSTSATRVAKDQSPKNIHRDASASSIDKKANGSKTTRSAQSQSRSQQHLKENSQSSVKHSGTVSPRLQQKKLELEKRSRPPAPPSDSTKLRRPSGKKATESGSPGGKQRPKALNSRHNDEQLSEISNESRSLSCLGDEISLQSDSLTVNSKMEVEVTSSLKSVEIDDSQSPSLKAVKQLISETAQKKSTPRLDEDESVAELGGDAPEHPSPISVLDGSVYRDDVPSPVKQISEDSKGDDAQESKENEIKDQWNPSESLSFHSMGSGEINRKKLQNIDHLVQKLRRLNSSHDEARIDYIASLCENSNPDHRYISEILLASGLLLRDLSSELLTFQLHSSGNPINPELFLVLEQTKASSLLSKEESTPEKDSNMKLNKEKFHRKFIFDSVNEILGTKLGSSPEPWFLPNSNRLTKKTLSAQKLLKELCFEIEKIQAKKPECCLEDEDDDLKSMLCQDVMLGSESWTDFHGYLPGIVLDVERLIFKDLVDEVVIGESSGLRVKPSVRRRKLFGK 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00810 1100 Pfam DUF761-associated sequence motif 330 349 IPR032795 -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 68 91 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 291 330 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 161 199 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 584 600 - -
Vimu10g00810 1100 PANTHER LONGIFOLIA PROTEIN 1 1098 IPR033334 GO:0051513
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 776 791 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 615 656 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 50 91 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 584 722 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 816 840 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 347 441 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 770 845 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 161 185 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 489 534 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 496 534 - -
Vimu10g00810 1100 Pfam Domain of unknown function (DUF4378) 897 1077 IPR025486 -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 350 381 - -
Vimu10g00810 1100 MobiDBLite consensus disorder prediction 283 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00810 Vimu-Chr10 7140986 7145882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00810 130 1099 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 47.538 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00810 - - gmx:100787391 1829.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00810 10 7140986 7145882 Vimu10g00810 10 7140986 7145882 ECH
Vimu7g00869 7 8515188 8519657 Vimu10g00810 10 7140986 7145882 PCT