Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00802 ATGACGTTGGGCGCGAAATATGCAAACGCGCGTTTCCTCGGAAGCACTTCCGCTTTCTCCCACTACAGAAAAAAAATCGCGGTGGCGAACCTATTCCAGAAGTACGGTTTCCCCTCTTCCCTCATCCCTTCCTTCATCTCCCGCAACCCTTCCCTTCTCCATTCTCCTCTACCTCAACTCCACCATTCCCTCACCACCCTCTTCTCCCTCCGCATCCCCCAAAACGACCTCGTTTCGCTTCTCACTGCCAATCCCTCCCTCCTCCACCATTCCTTCCACCACACCCTCCAATCCCGTCTCCCCCATCTCCAAACGCGCTTCCCCACACTCTCCCCTTCCACCCTCCTCAACCTCCTCCTCTCTTCCACAAAGTTACATCTCGACCCGCTCCAACTCTCACCCAAACTCAACGCGCTCAAAACCGATTTCGCGTTTTCCGACGCCACCGTGGCCAGCATTCTGGAAGGGTTCCCCGACGTGGTTGTCACGAGCGAGAACGAAATCGCGAGCGTGATAGATTTTCTCGCGGGGTTCGGAATTCCCCGGGACGAGATTGATCTCGTTGTCCGTTCGTTTCCTAGGGTTTTGGCGCTCGGTGTTGAGCAGAGGCTGATGCCGTTGTTTCGGGAAATCAAGGAGCTAGGGTTTTCCAATCGTGAGATGAGGATAGAGATCTCGCGGGACCCGAGGATTCTGGGGATGGAAATTGGAGAGCTTACGCGGTGTTTGAGACTGATAGAGAGTTTGAAATGCAGGGAAAGTATCAAAGAGAGGGTTATGGGTTCGGGTCTGATGAGAGCGTGTTTTGAGGTGAAATTGAGAGTGGATTGTTTGTGTGGGTATGGTTTGACTCGAAGGGATGCTCTGAAGGTTATTTGGAAGGAGCCTAGGGTGATTTGTTACGAGGTTGGGGATGTTGAAAGGAAGGTTGAGTTTCTGGTGCAGAGGATGAAGTGTAGTGTGGAGTGTTTGGCTGAGGTGCCTAAATACTTGGGTGTGAATTTTGAGAAGCAGATTGTGGCTAGGCACAGTGTAGTGGAGTGTTTGAGGGGGAAGGGTGCCATTGGGTTTGAGTTTGGGTTGAAGGATTTGGTTATGCCTTCTAGGCTTAGGTTCTATAATCTTTATGTGAAGCCATACCCGGAGTGTGAAAAGATCTATGGAAGGTTTTCTGGGTGTGGTGTTCAAGTTAAGACGAAGCATCCCGCTGGACTGTGGAAACTTTTTAAACCGCAGAAGTTTGCTGAAAGGGATGAAGATGTGAAGAGCGTGAGGTCATTCATGGAGTCTCTGGTTTAG 1299 0.5096 MTLGAKYANARFLGSTSAFSHYRKKIAVANLFQKYGFPSSLIPSFISRNPSLLHSPLPQLHHSLTTLFSLRIPQNDLVSLLTANPSLLHHSFHHTLQSRLPHLQTRFPTLSPSTLLNLLLSSTKLHLDPLQLSPKLNALKTDFAFSDATVASILEGFPDVVVTSENEIASVIDFLAGFGIPRDEIDLVVRSFPRVLALGVEQRLMPLFREIKELGFSNREMRIEISRDPRILGMEIGELTRCLRLIESLKCRESIKERVMGSGLMRACFEVKLRVDCLCGYGLTRRDALKVIWKEPRVICYEVGDVERKVEFLVQRMKCSVECLAEVPKYLGVNFEKQIVARHSVVECLRGKGAIGFEFGLKDLVMPSRLRFYNLYVKPYPECEKIYGRFSGCGVQVKTKHPAGLWKLFKPQKFAERDEDVKSVRSFMESLV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00802 432 Pfam mTERF 117 239 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 Pfam mTERF 273 365 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 43 73 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 222 252 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 151 181 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Vimu10g00802 432 FunFam Transcription termination factor MTERF15 mitochondrial 165 387 - -
Vimu10g00802 432 Gene3D Transcription termination factor 3, mitochondrial 162 390 IPR038538 -
Vimu10g00802 432 PANTHER CGI-12 PROTEIN-RELATED 17 103 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu10g00802 mTERF 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00802 - - vum:124840038 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00802 10 7086717 7088015 Vimu10g00802 10 7086717 7088015 ECH