Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00800 ATGGAACACAAAATGTTACCTGCCATTGGATCTGTTGTCCCTCGTGGTGCTTTTGCATTCTACAGGTATTGGCTTCCTCCCATTGTTTGCATGGAGCTCAAATTTGGTTCCTACATGTACATTGATAATTTGGTTTCTGGTTCTGTTTCTATTTCTGAGTTACCGAAAGCCTATGATCCGCTTGATCCAACTGGCAATATAACAATCAAATGGGATGTCATTAGCTGGACTCCAGATGGCTATCTTGCTGTTGTTACAATGTACAACTTTCAACAATATCGCCACATTCAGTCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAAAAAGAAGTAATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGTATTCCTCATTGTTGTAAGAAGGATCCAACAGTGGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGAGGTGTCCTAAATTCATGGGGTCAGGACCCCAGTAGTGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCTGGAACCACAAACAGAACGGTCAAACTGCCTAAAAATTTTACCCTCAAAGCACCAGGACCTGGCTACACTTGTGGTCCTGCAAAGGTTGTGAAACCAACTACATTTATTACCAGTGACAAGAGGAGAACCACCCAAGCCATGATTGTATCAGCATCAGGCAAAGGTGCAAATACACCTCTAGTTCAGTGCACCAGCCACATGTGTCCTATTCGAGTGCATTGGCATGTGAAACTCAATTACAAAGAGTACTGGAGGGTGAAGCATCCCAATTTAGATAATATTACCCAGCTCTTCAGTTTTCAGTACAAGTCGCTAACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAATCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGACCTCTTGGGAACGTTCAATCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCATTCCCGAGAAGGATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCTTGGCTGCCAAATGCAAAATATAGAGGAACCATCTACTCTCTTGGAGCATTGTATCTCTCTCTTCTGCACCAGCTTGTGAAAGATAAAGTCATCCCCGTTGTCAAAAAGGCATAG 1206 0.4312 MEHKMLPAIGSVVPRGAFAFYRYWLPPIVCMELKFGSYMYIDNLVSGSVSISELPKAYDPLDPTGNITIKWDVISWTPDGYLAVVTMYNFQQYRHIQSPGWSLGWTWAKKEVIWNMMGSQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSSAVSSFQISVGSAGTTNRTVKLPKNFTLKAPGPGYTCGPAKVVKPTTFITSDKRRTTQAMIVSASGKGANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKHPNLDNITQLFSFQYKSLTPYEGLNDTSMLWGIKFYNDFLSSAGPLGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNAKYRGTIYSLGALYLSLLHQLVKDKVIPVVKKA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00800 401 PIRSF COBRA 235 393 IPR006918 GO:0010215|GO:0016020
Vimu10g00800 401 PIRSF COBRA 31 238 IPR006918 GO:0010215|GO:0016020
Vimu10g00800 401 Pfam COBRA-like protein 81 235 IPR006918 GO:0010215|GO:0016020
Vimu10g00800 401 PANTHER PROTEIN COBRA 51 235 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00800 Vimu-Chr10 7075135 7078191 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00800 57 299 COBRA Gene Family AT5G15630 57.009 2.70e-126 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00800 - - peu:105112321 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00800 10 7075135 7078191 Vimu10g00800 10 7075135 7078191 ECH
Vimu7g00878 7 8585275 8588771 Vimu10g00800 10 7075135 7078191 PCT