Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00797 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTAACGTTCTCCAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCTGAGAGGCAGCTTGTTGTAAGTGATCAACCACAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTTCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGATGGTCTAAGTATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTAATAAAAAGGTGAGTCTTATGTCCATATTTTCTCCCTTATTGGATTTGCCCCCAACTAGTATTCCTCAAGATAAGGCCCTACAAGAACAAAACAACACTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCAGCACAACAAGCACAGTTTGAGCGACAAGCTGATGAAATGGATCTAGCCTCCTCTGTCCTCGTACCTCAACCATTGGAGACATCTAATATTAGAGGGTCGTCACAAGTAAGAGGTGATGAAGGAGATAATGATGGAATGGTAACTCCAAGCCGAGCAAATGCCATTCTTCCACCATGGATGCTTCGTCCTACAAATGAATAG 801 0.422 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVVSDQPQSENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKVSLMSIFSPLLDLPPTSIPQDKALQEQNNTLAKKIKEKEKALAAQQAQFERQADEMDLASSVLVPQPLETSNIRGSSQVRGDEGDNDGMVTPSRANAILPPWMLRPTNE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00797 266 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 Coils Coil 125 145 - -
Vimu10g00797 266 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vimu10g00797 266 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vimu10g00797 266 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vimu10g00797 266 Coils Coil 88 108 - -
Vimu10g00797 266 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Vimu10g00797 266 Coils Coil 178 212 - -
Vimu10g00797 266 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vimu10g00797 266 Pfam K-box region 83 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g00797 266 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 ProSiteProfiles K-box domain profile. 88 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu10g00797 266 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 MobiDBLite consensus disorder prediction 226 266 - -
Vimu10g00797 266 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu10g00797 266 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00797 Vimu-Chr10 7038703 7045735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00797 1 230 MADS-box Gene Family AT1G26310 56.034 5.11e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu10g00797 K-box 8.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00797 K09264 - gmx:100816836 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g00880 7 8625372 8630412 Vimu10g00797 10 7038703 7045735 ECH
Vimu6g01051 6 11195519 11201634 Vimu10g00797 10 7038703 7045735 ECH
Vimu10g00797 10 7038703 7045735 Vimu10g00797 10 7038703 7045735 ECH
Vimu7g00882 7 8644861 8646920 Vimu10g00797 10 7038703 7045735 PCT