Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00789 ATGCAGGATATACATTCCATCTGCGGCGGTGACCGCAGGCTCAGACAGCACCACCACCACCACCAGCCGCTAAAGTGCCCGCGCTGTGACTCACTCAACACCAAGTTCTGCTACTACAACAACTACAACCTCTCCCAGCCACGCCATTTCTGCAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTTCGCAATGTCCCCGTCGGCGGTGGTTGCCGCAAGTCGAAACGCTCCAACAAACCAAAAACCACCGCCAACAACACCAACGATAGCAGCAGCAACAACAACAACAATCCTTCCCCTTCCTCGCAGATCGCTCCGGCAACCGCGTCCACGACGCCGTCGACTGCGGAGCCGGAGCGCAACTCGAACTCCCACTCCAGCAGCGAAAGCTCCACCCTAACCGTCACGGAGGCGATGTCGGCGCCGACATCGAACACTTTGTCTAGCAACGCTTTGTTCCTGGACAACGTCCGCGAGTCGAAGCTGTTCGCTACCGCTAATAACCCCTCTTTGGAGGGCGGTGGCGTTTTCTCTGAGATAGGGAGCTTCAGCGGCCTCATTGCTTCAAATAACGAATCATTGGGGTTTGGGTTTGGGAATTGCAGTAATAACAACGGCAACAGCAACAGCAACATCCTCGATGCGACGACGTTTCGGTTCGGCGTTACTGATCCGCAGGGGAATAATAATGATGAAGTGCAAGTGGCGGCCGGTGGAGAGCAACAGCAGAATCATCATCAGGAGTTCGGTACGGCGTCGTTTCTCGATCTGACGGCGCCGGTGGAGTTTTGTTCGTTGGCGCAGAAGAGTGGACATCATGGAGGGTTTGGGTCGTTGGATTGGCAAGCCGGTGGGGATCAAGGTTTGTTTGATCTCCCTAACACCATTGATCAAACATACTGGAGCCAGAGTCATTGGTCCGATCAAGATAATCCCTCTCTCTTTCACCTTCCTTGA 963 0.5493 MQDIHSICGGDRRLRQHHHHHQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKTTANNTNDSSSNNNNNPSPSSQIAPATASTTPSTAEPERNSNSHSSSESSTLTVTEAMSAPTSNTLSSNALFLDNVRESKLFATANNPSLEGGGVFSEIGSFSGLIASNNESLGFGFGNCSNNNGNSNSNILDATTFRFGVTDPQGNNNDEVQVAAGGEQQQNHHQEFGTASFLDLTAPVEFCSLAQKSGHHGGFGSLDWQAGGDQGLFDLPNTIDQTYWSQSHWSDQDNPSLFHLP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00789 320 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Vimu10g00789 320 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Vimu10g00789 320 MobiDBLite consensus disorder prediction 68 144 - -
Vimu10g00789 320 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Vimu10g00789 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 228 IPR045174 GO:0003700|GO:0006355
Vimu10g00789 320 MobiDBLite consensus disorder prediction 1 25 - -
Vimu10g00789 320 MobiDBLite consensus disorder prediction 82 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00789 Vimu-Chr10 6951885 6952847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00789 11 320 C2C2-Dof Transcription Factor Family AT5G60850 40.063 7.42e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu10g00789 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00789 - - vun:114196340 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00789 10 6951885 6952847 Vimu10g00789 10 6951885 6952847 ECH
Vimu7g00889 7 8685992 8686858 Vimu10g00789 10 6951885 6952847 PCT