Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00778 ATGAGCAACCCTGGAGATGAAAAGGAGCTGTGTCAAAAGAAGAGGAAATCCACCATTTGTGAAGCCTCTAACTTTAGGACATCCAGGAGAAGATTCTGCAGCAACCAAATTGAAGAGGAGATGAACAAGGGAGTTTCAACAACATTGAAGCTTTACGATGACCCATGGAAGATCAAGAAGACTCTAACTGATAGTGATTTGGGAATCCTAAGTAGACTCTTGCTGGCTGCAGATTTGGTCAAGAAACAAATTTTGCCTATGTTGGGTGCAGATCATGCAAGAGCTGCTGAAACTGAAGAAGGTACCCCAGTTAGAGTTTGGGACATGGACACCAAATCCATGTACCAACTCCTCCTAAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGACTTCGTCAGAAGAAGAGATCTAAAGAAAGGTGATGAGATCGGATTTCATTGGGATCCATATAATTGCATTTTCAATTTCTGTGTTCTCAAACGAGCTATGCCAGATAATTAG 522 0.4176 MSNPGDEKELCQKKRKSTICEASNFRTSRRRFCSNQIEEEMNKGVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLGADHARAAETEEGTPVRVWDMDTKSMYQLLLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCIFNFCVLKRAMPDN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00778 173 Gene3D - 55 170 IPR015300 -
Vimu10g00778 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 29 168 - -
Vimu10g00778 173 SUPERFAMILY DNA-binding pseudobarrel domain 54 168 IPR015300 -
Vimu10g00778 173 CDD B3_DNA 56 167 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00778 58 153 RAV Transcription Factor Family AT1G50680 34.951 2.94e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00778 - - pvu:PHAVU_009G204600g 351.673