Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00774 ATGGAAGCCAGCGCTGGACTGGTAGCAGGTTCTCATAACCGCAATGAGCTCGTTGTCATTCACGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGTCAAGTATGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACTTATTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGACCTTGCTATGAGTACGAAAGAAGAGAAGGGGGGCAGCTTTGTCCACAGTGCAAAACCAGATATAAGCGTCTCAAAGGGAGCCCGCGCGTGGAGGGAGATGATGAGGAGGAGGATGTGGATGACATTGAGCATGAGTTCAATATTGATGACGAAAAGAACAAGCATGGCCATGCTGCAGAGGCCATGCTTCATGGGAAAATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAATACCTGTCATTTCTGGTGGCCGATCTAGGCCTGTTAGTGGCGAGTTCCCAATATCATCTAATGGTTATGGAGAGCAGATGTTGTCTTCTTCACTGCACAAACGAGTGCATCCATATCCAGTGTCTGAATCTGGGAGTGCCAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGAAAGGATGGATGACTGGAAATTGCAGCAAGGCAATTTGGGGCCTGAACCTGATGAAGATGCAGATGCAGACATGTCAGATGAAGCAAGGCAACCACTTTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGAATGGTTATTGTGGCACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTATGAATCCTGTGCATGATGCACTGGGGCTGTGGCTAACCTCTATCATATGTGAAATATGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATCGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCAAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACCGTGGATCCAATGAAGGAACCTCCTCTGGTTACCGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCATGCTATATTTCGGATGATGGAGCCTCAATGTGTTCATTTGAGTCCCTGTCAGAAACTGCAGAGTTTGCAAGGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGGGCCCCTGAGATGTACTTCAGTGAGAAGATAGACTACTTAAAGGACAAAGTGCAACCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATTATGCAGGATGGGACACCATGGCCAGGAAACAACACTAAGGATCATCCTGGCATGATTCAAGTGTTTCTTGGAAGCAATGGGGGTCTAGATACTGAAGGAAACCAGCTTCCTCGTCTTGTTTATGTTTCTAGAGAGAAAAGACCTGGTTTTCAGCACCATAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCAGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCCGCCAGAGAGGCCATGTGCTTCTTGATGGACCCCCAGATCGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGACGGTATTGATACACATGATCGTTATGCCAACAGAAACACAGTTTTCTTTGACATTAACATGAAGGGTCTTGATGGTATTCAAGGACCTGTATATGTGGGGACTGGGTGTGTTTTCAAGAGGCAAGCTTTGTATGGCTATGATCCTCCAAAGGGCCCCAAGCGTCCAAAAATGGTAAGCTGTGATTGCTGCCCTTGTTTTGGAAGCCGCAAGAAGTACAAGGAGAAGAGTGATGCAAATGGAGAGGCTGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATACTGATGTCCCAAATGAATTTTGAGAAGAAATTTGGACAGTCCTCTATCTTTGTGACTTCTACCTTGATGGTAGAGGGTGGTGTGCCTCCTTCTTCGAGTCCAGCTGCCCTGCTTAAAGAAGCCATTCATGTGATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTCGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTTTAACAGGCTTTAAGATGCATTGCCGTGGGTGGAGGTCTATTTACTGTATGCCTAAGAGAGCTGCATTCAAGGGTACTGCTCCGATCAACTTGTCAGATCGTCTCAATCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTATGGCTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCTTACGCAAACACAACTGTATATCCATTCACCTCCATTCCTCTTGTTGCCTATTGTATTCTTCCTGCAGTTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCCGGTTTGTACTTTGTTGCTCTCTTCTCTTCAATCATTGCAACTGGTATTCTAGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAGTGGTGGAGAAATGAGCAGTTTTGGGTGATTGGTGGAGTATCAGCTCACCTATTTGCTGTAATACAAGGTCTGCTAAAGGTTCTGGCTGGAATTGACACCAACTTCACAGTCACATCCAAGGCAGCAGATGATGAGGACTTTGGAGAACTATACACCTTTAAGTGGACTACTCTCCTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAGTCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTGTTTGGAAAACTTTTCTTTTCTTTCTGGGTGATTGTTCATCTTTATCCCTTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTGGTGATTTGGTCAGTTCTATTGGCTTCTATTTTCTCTTTGCTGTGGGTAAGAATTGATCCGTTTGTCCTCAAAACTAAGGGACCCGATACCAAGTTATGTGGAATCAACTGCTGA 3123 0.4508 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGGQLCPQCKTRYKRLKGSPRVEGDDEEEDVDDIEHEFNIDDEKNKHGHAAEAMLHGKMSYGRGPEDDENSQFPIPVISGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPVSESGSARWDEKKEDGWKERMDDWKLQQGNLGPEPDEDADADMSDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCSFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSNGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQIGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFKRQALYGYDPPKGPKRPKMVSCDCCPCFGSRKKYKEKSDANGEAAASLKGMDDDKEILMSQMNFEKKFGQSSIFVTSTLMVEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGVSDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00774 1040 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 853 IPR029044 -
Vimu10g00774 1040 SUPERFAMILY RING/U-box 21 107 - -
Vimu10g00774 1040 Pfam Cellulose synthase 332 1034 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu10g00774 1040 CDD mRING-HC-C4C4_CesA 35 85 - -
Vimu10g00774 1040 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Vimu10g00774 1040 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 478 623 IPR029044 -
Vimu10g00774 1040 FunFam Cellulose synthase 449 623 - -
Vimu10g00774 1040 MobiDBLite consensus disorder prediction 207 237 - -
Vimu10g00774 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Vimu10g00774 1040 Coils Coil 430 450 - -
Vimu10g00774 1040 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1007 - -
Vimu10g00774 1040 FunFam Cellulose synthase 19 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00774 Vimu-Chr10 6792596 6797929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00774 1 1040 Cell Wall Biosynthesis AT5G17420 85.988 0.0 1844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00774 K10999 - gmx:100815436 2062.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00774 10 6792596 6797929 Vimu10g00774 10 6792596 6797929 ECH
Vimu7g01217 7 11645077 11650425 Vimu10g00774 10 6792596 6797929 PCT