Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00773 ATGCAAAACCCAACCTCTCACAGATACTTGCACTGCTTCCATTCCCCATTCACCATGGAAGCTAGTACAGGTCTTTTTGCTGGTACTCCAAACAGCAAAGAGCTTGTGGCCATTCAAGGACACGATGAGCCTAAGCCGGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGTGATTCTGTGGGAGTTACAGTTGAAGGAGACTTGTTTGTAGCTTGTGAAGAGTGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAGAGAAGGGAAGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGCATCAAAGGAAGTCCAAGAGTGGAGGGAGATGAGGATGAAGACGATGTGGATGACATTGAACATGAATTCAAGCACGAAGAGATGCAAAAGGGAAACATGATCCATGGAGATGATGATGGGAATTCTAAATCGGGTTTAGCAAAGGTGAATGGGGAGCTGCTTTCTACAAGTGCGGGAGAACCTGGTGCAAAGTTGGATGACAAGGAGAACATAGATGAGTGGATGTTGCGCCAAGGGAATCTGTGGCCTGAAACTGATGCCTCAGTTGATCAGGAAAAGGCCATGAAAGAGCCATTGTCAAGGAAAGTAGCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCCAGATTCCTCCTTCTATTACTCTTCTTCCAGTACAGAATCTTCCACCCAGTACCTGATGCAGTTGGACTATGGTTCGTATCTGTAACGTGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGATTCCCAAATGGTTCCCCATTGATCGCGAGACATATCTTGATCGTCTTTCAATCAGGTTTGAACAAGAGAACAAGCCAAATATGCTTTCTCCAATAGATATCATTGTCACTACTGTGGATCCAATCAAGGAACCTCCTCTCGTGACAGCCAACACTGTTCTTTCAATCTTGGCCCTGGATTACCCTGCTGACAAAATCTCGTGCTATGTTTCTGATGACGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAGTTTTCCAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCTCTATAGAACCCAGAGCACCAGAAAAGTACTTCTCTGAGAAAATAGATTTTCTAAAGGATAAGCTTCAATCAACTTACGTAAAAGAACGGCGTACTATGAAGAGAGAATACGAAGAATTTAAGGTGAGAATAAATGCACTGGTGGCTAAATCTATGAGAGTTCCCCCAGAAGGGTGGACTCTGAAAGATGAGACACCATGGCCAGGAAACAACCCCAAAGATCATCCAAGTATGATACAGGTTCTTCTTCCACACAATGTTGGTAATGAACTTCCTTGCCTTGTCTACACATCTCGTGAGAAAAGACCTGCATTTCAACACCACGGAAAAGCTGGTGCAATCAACGCCTTGCTTCGAGTATCAGCAGTGTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTACGTAAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATGGCATTGGCTTTGTACAGTTTCCACTAAGGTTTGACAGCCTAGATAGGCATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGCATGCATCTTCAGAAGGAAATCCTTAACTGGCAGTGACTCACCAGTGTCTTCAAAACGCCCAAGCATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAGCTAGCATAACAGCAGCAACAGATGAGGAAAAAGAACTATTGAAGTCACAGATGAATGATGAAAATAAATTTGGAAAGTCCACACCTATCATGAACTCTTCATTAACTGAAGAAGGTGGTATTGATCCTTCTTCCAGTCAGGAAGTCTTGCTTAAAGAAGCTATTCATGTCATGGGTTCTAAATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTAAGTTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCATGGTTGGAGGTCTGTATATTGCATGCCCAAAAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCCACCATTGCCCTCTTCTGTATGGCCTCAGTGGTGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAATATACTGTATCGTTCCTGCTATATGCTTGCTCACTGATAAATTCATCACACCATCGGTTGACACTTTTGCAAGTCTAGTTTTCACCGCATTGTTCATCTCAATCTTTGCCTCAGCGATTCTTGAATTGAGATGGAGTGGAGTTAGCCTGGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTGATTGGGAGTGTGTCTGCAAACCTCTTTGCCGTTGTGCAGAGCATTATGGGAGCTCTTCCACTGGGTAGAGTGAACACAAACTTCAGCATTGTATCAAAGGCTCCAGATGATGTAGAGTTTCGTGAACTGTATACCATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTATAGTGGCTGGCTTCACAGATTCCATAAACAGTGGAGAACATTCTTGGGGAGCACTGCTTGGGAAACTCTTCTTTTCTTTATGGGTTATTGTCCATTTGTATCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTAGTTTGGGTGAGAGTTGACCCTTTTGTGTTGAAAACCAAGGGACCTGATGTCAAGCAATGTGGAATCAGTTGCTGA 2979 0.4377 MQNPTSHRYLHCFHSPFTMEASTGLFAGTPNSKELVAIQGHDEPKPVKNLDGQLCEICGDSVGVTVEGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEMQKGNMIHGDDDGNSKSGLAKVNGELLSTSAGEPGAKLDDKENIDEWMLRQGNLWPETDASVDQEKAMKEPLSRKVAIPSGKLSPYRMMVVARFLLLLLFFQYRIFHPVPDAVGLWFVSVTCEIWLALSWMIDQIPKWFPIDRETYLDRLSIRFEQENKPNMLSPIDIIVTTVDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFSRKWVPFCKKFSIEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTLKDETPWPGNNPKDHPSMIQVLLPHNVGNELPCLVYTSREKRPAFQHHGKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRHDRYANKNTVLFDINLRCLDGIQGPAYVGSACIFRRKSLTGSDSPVSSKRPSMVQVHSKQDENGEEASITAATDEEKELLKSQMNDENKFGKSTPIMNSSLTEEGGIDPSSSQEVLLKEAIHVMGSKYEDRTLWGYEVGLSYGSIAADTLTSLKMHCHGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSHHCPLLYGLSGGRLKGLQRIAYINSTVYPFSSIPLLIYCIVPAICLLTDKFITPSVDTFASLVFTALFISIFASAILELRWSGVSLEEWWRSQQFWVIGSVSANLFAVVQSIMGALPLGRVNTNFSIVSKAPDDVEFRELYTIRWTALLIPPTTIIIINLIGIVAGFTDSINSGEHSWGALLGKLFFSLWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRVDPFVLKTKGPDVKQCGISC 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00773 992 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 203 959 - -
Vimu10g00773 992 SUPERFAMILY RING/U-box 40 125 - -
Vimu10g00773 992 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 287 395 IPR029044 -
Vimu10g00773 992 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 448 585 IPR029044 -
Vimu10g00773 992 MobiDBLite consensus disorder prediction 581 611 - -
Vimu10g00773 992 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 128 IPR013083 -
Vimu10g00773 992 MobiDBLite consensus disorder prediction 582 596 - -
Vimu10g00773 992 Coils Coil 397 417 - -
Vimu10g00773 992 FunFam Cellulose synthase 37 128 - -
Vimu10g00773 992 CDD mRING-HC-C4C4_CesA 53 103 - -
Vimu10g00773 992 Pfam Zinc-binding RING-finger 45 122 IPR027934 -
Vimu10g00773 992 MobiDBLite consensus disorder prediction 597 611 - -
Vimu10g00773 992 Pfam Cellulose synthase 607 986 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu10g00773 992 Pfam Cellulose synthase 299 597 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu10g00773 992 SUPERFAMILY Nucleotide-diphospho-sugar transferases 299 807 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00773 Vimu-Chr10 6785092 6790291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00773 19 992 Cell Wall Biosynthesis AT5G17420 62.658 0.0 1320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00773 K10999 - gmx:100777270 1801.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00773 10 6785092 6790291 Vimu7g01217 7 11645077 11650425 PCT