Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00754 ATGAACGAACAGAGCAAGAACAACAAATTACGATGTCACGGGTTGTTGTGTGTGGCTGAGGGAGAGTATGAAGACGAGAGAGAAACAAATTGGATAAGTGAGGAAAGTGGATTAAGGTTAGACAAGGTAGGGATGACAGACAGAGAAAGTGTTGGAGCGACAGAAATGAAAGAGAAAGGGTTGAGAGGAATGAGGGAGAACATTGTGATGTGTATTCTAAGAGTTTACCATTTTAGGTTCTACTCGGATGGAAAAAAGCATAAAAAATCGCTGTGGGGAGCTGCTGAGCCTCCAGCGCTTAAACCTAGCAATTTGCTGCCATTGGGGAAAAATAGAATTATTGAAACATTTAGAATTAGCGGATCGAAGGTATTCCCGGAGGACCACGAGCCGTGGCGTAAAAGAATACTTGACCCTGGTAGTGAGATTGTGTTGAAATGGAACCGGGTCTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCATTGTACTTTTATTTGCCTAGTGTGATAGAAAATACAGGGTCTTCATGTGTAAGGACAGACCTAACATTGCGCATTGTTGTGACCTTTCTGCGCACTATTGCGGACCTCTTTTATCTGTTGCACCTGATAATTAAGTTCAGGACCGCATATGTTGCACCAAGCTCACGGGTATTTGGCAGGGGAGAACTTGTCATGGACCCAAAGAAGATTGCAAGAAGATATTTCAGATCTGATTTCTTCATTGATTTTATTGCTACACTCCCTCTACCCCAGATGGTCATCTGGTTTATTATCCCAGCAACAAGAAGCCCTCAGACTGATCACAAGAATAATGCGCTTGCATTGATCGTTTTGCTCCAATATGTTCCAAGATTATATTTGATTTTTCCGTTAAGTTCTCAAATAATCAAAGCGACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAACTTGCTGCTGTATATGTTAGCTAGCCACGTTTTAGGGGCATCTTGGTATCTTCTATCTGTGGACCGATACACTACTTGTTTGAAATCCTTTTGCAAAAAGGAACAAAATCCTGAAAATTGCTTTGGCTACCTGGACTGCAGTTCTTTGAATGTTGAGCTGCGCAAGTTATGGGCAAATAGTACTAATGTGTTTAGCAGCTGTGATCCCAATAATAAGGATATTAATTTCAAGTTTGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTTTCTTCAGCCTTTATTCCGAAATACCTTTATTGTTTATGGTGGGGACTGCAACAATTAAGGCCAATTGGTAAAGATTATACTGGAGGAATAGATCCATATACTGGACTTGTAGCTAAAAGTGCTCACAATATGGTATGTCCATTCTGTGAAGGAGTAAGAATTGCAGTTGACTAG 1392 0.4073 MNEQSKNNKLRCHGLLCVAEGEYEDERETNWISEESGLRLDKVGMTDRESVGATEMKEKGLRGMRENIVMCILRVYHFRFYSDGKKHKKSLWGAAEPPALKPSNLLPLGKNRIIETFRISGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSSCVRTDLTLRIVVTFLRTIADLFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYFRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSVDRYTTCLKSFCKKEQNPENCFGYLDCSSLNVELRKLWANSTNVFSSCDPNNKDINFKFGIFENAVKKHVVSSAFIPKYLYCLWWGLQQLRPIGKDYTGGIDPYTGLVAKSAHNMVCPFCEGVRIAVD 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00754 463 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 128 431 - -
Vimu10g00754 463 Pfam Ion transport protein 147 423 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu10g00754 463 SUPERFAMILY Voltage-gated potassium channels 141 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00754 Vimu-Chr10 6613406 6617269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00754 80 431 Ion Channels AT4G30360 61.096 2.91e-149 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00754 K05391 - gmx:100810967 666.381