Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00753 ATGGGAAGGATTCACGCAGCGCAAATCCCTCAACTTGACAATTCTTATGGGCAAAACCTAGAAACTAGCACGTTTATTGGGGAAACATCATTCGCTATTGTCATTGCCATCTTAGGTCTTGTATTATTTTCCCATTTGATTGGGAACATGCAGACATATTTGCAATCTATCACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGGGACACAGAAGAGTGGATGAAGCATCGCCAACTCCCTGAAGATTTGAGAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACCATTCTACGCGCATTACCAGCTGATCTTCGCCGTGATATTCAAAGACACCTTTGCTTAGACCTTGTTAGAAGAGTTCCCTTCTTCTCACAGATGGACGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTCGTGAGGGTGACCCTGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACCAACGGTGGCCGTACTGGTTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAGCTACTCTCTTGGGCGTTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACCAGGACAGTTAAAGCCATAAGTGAGGTTGAGGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTTGCCAATCAATTTAGGCGCCTTCACAGTAAGAAGCTGCAGCACACTTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATATCTATGAAAGACCTCGGTTTGAGGGAGTCCATTCCTTCAGATGAGACAGTAGCAAGTGAGAGAGAACATGAGGACTATTCTGCCAGTTCAAATTCAACTCAAGCTAAGTTGAACCTTGGGGCAACAATTCTTGCTTCGAGATTTGCTGCTAATACAAGAAGAGGAGCCTTGAAGATTAAAGATGACATGCCCAAGTTACCAAAGCCCGAAGAACCCGACTTTTCAGCTGAAGCCGATGATGATTAG 1107 0.4444 MGRIHAAQIPQLDNSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMKHRQLPEDLRSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKAISEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRISMKDLGLRESIPSDETVASEREHEDYSASSNSTQAKLNLGATILASRFAANTRRGALKIKDDMPKLPKPEEPDFSAEADDD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00753 368 Gene3D Helix hairpin bin 61 124 - -
Vimu10g00753 368 ProSiteProfiles cAMP/cGMP binding motif profile. 133 263 IPR000595 -
Vimu10g00753 368 FunFam Cyclic nucleotide-gated ion channel 1 60 124 - -
Vimu10g00753 368 Gene3D Jelly Rolls 131 251 IPR014710 -
Vimu10g00753 368 SMART cnmp_10 133 264 IPR000595 -
Vimu10g00753 368 MobiDBLite consensus disorder prediction 345 360 - -
Vimu10g00753 368 Pfam Cyclic nucleotide-binding domain 156 244 IPR000595 -
Vimu10g00753 368 SUPERFAMILY cAMP-binding domain-like 63 255 IPR018490 -
Vimu10g00753 368 CDD CAP_ED 133 264 IPR000595 -
Vimu10g00753 368 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 361 - -
Vimu10g00753 368 MobiDBLite consensus disorder prediction 345 368 - -
Vimu10g00753 368 FunFam Cyclic nucleotide-gated ion channel 1 131 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00753 Vimu-Chr10 6607537 6609859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00753 14 367 Ion Channels AT4G30360 76.880 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00753 K05391 - gmx:100810967 678.707