LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g00750	ATGATGGCTGAGAAAACCAACAGCAACAGCGCCGAGGCTAATAACTCCATGTTGCTCCACGGGAAGTACGAGCTAGGGCGGCTACTGGGGCATGGAACGTTCGCCAAGGTGTACCACGCGCGGAACCTCAAGAGCGGAAAGAGCGTGGCGATGAAGGTGGTGGGGAAGGAGAAATTGATTAAGGTGGGGATGATGGAGCAGATCAAAAGGGAGATCTCCGCCATGAACATGGTCAAGCACCCCAGCATCGTTCAGCTCCACGAGGTCATGGCCAGCAAGTCCAAGATCTACATCGCCATGGAGCTCGTGCGAGGCGGCGAGCTCTTTAACAAGATCGCCCGCGGTCGTCTCAGGGAGGACACGGCGCGCCTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGTGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTTCTCGACGAGGAGGGCAACCTCAAAGTCACCGACTTCGGCCTCAGCACCTTCTCCGAGCACCTCCGCCAGGACGGCCTGCTTCACACCACGTGCGGCACCCCGGCCTACGTGGCGCCGGAGGTCATCGGGAAAAAGGGCTACGACGGCGCCAAGGCTGATATCTGGTCTTGCGGTGTAATCCTCTATGTACTCCTCGCAGGGTTTTTACCCTTCCAGGATGACAACTTGGTCTCCTTGTATAAGAAAATTTACCGCGGTGACTTCAAGTGTCCGCCGTGGTTTTCATCCGAGGCACGCCGCCTCATTACGAAGCTCCTCGACCCGAACCCGAATAACCGAATAACGATTTCCAAGATCATGGAGTCGTCCTGGTTTAAAAAGTCGGTTCCGAAGGACGTGATGGGAGCGAAGAGAGAAGAGTTGGATTTGGAGGAGAAGATTAAGCAGTTGGAAGAATCTAAGTCCACCACAATGAATGCTTTTCATTTAATTTCACTTTCGGAGGGGTTCGATTTGTCGCCCTTGTTTGAGGAGAAGAAGAGGGAGGAGAAGGAGATTCGGTTTGCGACCACACGCCCCGCGAGTAGCGTGATTTCACGGCTGGAGGAGGTGGCGAAGGCGGTGAAGTTTGACGTTAAGAAAAGCGAGAGCAAAGTGAGGTTGCAGGGTCAACAGCGGGGTCGGAAAGGGAAGCTTGCAATTGCTGCGGATTTATACGCCGTAACGCCGTCGCTTTTGGTGGTGGAGGTGAAGAAGGACAACGGTGATACCTTGGAGTACAACCAGTTCTGCAGCAACCAACTTCGTCCTGCGCTTAAAGACATCGTGTGGAGGACTTCCCCTTCTGAGAATCCTACACCTGCTTGA	1323	0.5503	MMAEKTNSNSAEANNSMLLHGKYELGRLLGHGTFAKVYHARNLKSGKSVAMKVVGKEKLIKVGMMEQIKREISAMNMVKHPSIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREDTARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDEEGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADIWSCGVILYVLLAGFLPFQDDNLVSLYKKIYRGDFKCPPWFSSEARRLITKLLDPNPNNRITISKIMESSWFKKSVPKDVMGAKREELDLEEKIKQLEESKSTTMNAFHLISLSEGFDLSPLFEEKKREEKEIRFATTRPASSVISRLEEVAKAVKFDVKKSESKVRLQGQQRGRKGKLAIAADLYAVTPSLLVVEVKKDNGDTLEYNQFCSNQLRPALKDIVWRTSPSENPTPA	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g00750	440	FunFam	Non-specific serine/threonine protein kinase	305	429	-	-
	Vimu10g00750	440	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	141	153	IPR008271	GO:0004672\|GO:0006468
	Vimu10g00750	440	Gene3D	Transferase(Phosphotransferase) domain 1	105	283	-	-
	Vimu10g00750	440	ProSiteProfiles	NAF domain profile.	305	329	IPR018451	GO:0007165
	Vimu10g00750	440	Pfam	Protein kinase domain	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g00750	440	CDD	CIPK_C	311	425	-	-
	Vimu10g00750	440	Pfam	NAF domain	308	366	IPR004041	GO:0007165
	Vimu10g00750	440	SMART	serkin_6	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g00750	440	Gene3D	Phosphorylase Kinase; domain 1	20	104	-	-
	Vimu10g00750	440	ProSitePatterns	Protein kinases ATP-binding region signature.	29	56	IPR017441	GO:0005524
	Vimu10g00750	440	ProSiteProfiles	Protein kinase domain profile.	23	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu10g00750	440	Gene3D	Kinase associated domain 1, KA1	304	430	-	-
	Vimu10g00750	440	SUPERFAMILY	Protein kinase-like (PK-like)	20	285	IPR011009	-
	Vimu10g00750	440	FunFam	Non-specific serine/threonine protein kinase	13	308	-	-
	Vimu10g00750	440	CDD	STKc_SnRK3	22	276	-	-
	Vimu10g00750	440	FunFam	Non-specific serine/threonine protein kinase	14	102	-	-
	Vimu10g00750	440	Coils	Coil	285	308	-	-
	Vimu10g00750	440	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	13	425	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g00750	Vimu-Chr10	6546957	6548279	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g00750	1	434	CBL-interacting serine-threonine protein kinases	AT4G30960	71.847	0.0	641

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Vimu10g00750		Pkinase	1.6e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g00750	-		K07198	gmx:100806762	793.112