Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00749 ATGCAGCCTTGTAGCAGAGAAATGCAAGGGATAAACTCCCTCTTCAACTCTTCTTCCCAAATCTCCCTCCAGGACCTCCACACCACCACCGCCGCCGCCGCCGCCGCCAACCAGATCCAAAATTCACACATCAACCACCACCACCAACAACCACTCCAACTCCCTCACTTCGACCCAACCTCTCAGGATGACTTTCTCGACCAAATGTTCTCCTCCTGCTCCTGGCCCGACCTCAACCCAAACAAGTCCTTGTGGGACCCCAATACCCTCTCCGACCAAACCACTCCCTCCGACAACGACAATACCAATAATACTAACAATAATAATGTCGCTTTCCCCTACGACGAACCCTCCACCTTGGCCTCCAAGTTCCGCAACCACCAGATCACCGCCTCCTCTACAAAAAACGCCGCCGCAGCTCTCATGCTCCAGCACCAACTCCTCATGTCCAGAGACTCTCCGCTCCTTCACATGCCGCTTTCCTTACCTCAAAACGACGTCGTTGACGCCTCCTCCTTCAAATCCCCCAATCCCGGCGGCGAGACTTCGGTCCAGGCTCTCTACAACGGCTTTGCCGGATCTCTGCATGGCGCCGGTCAAGCCTCCAACCAGACTCAGCATTTTCAACATCCTCAGGGAAGTTCTAATCCGATGCAAGGACAAAATTTTGGTGCGGCGGGTACGGGGGCCGCAACGAACCAAGCTCCGGCGAGTGGCGCGGCGGCTCAGCCGAGGCAGAGGGTTCGTGCAAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAAAGGTTAAGAAGGGAGAGAATCGCAGAGAGAATGAAAGCCCTACAGGAACTGGTTCCCAATGCCAACAAGGTAAATGCTCACGTTAATGTAACAAGGAAACTGGAAAGAAAAGAATGGATAGTAATGTCGCGCTCCGGAGGTGCTGTGAGCGTTTGTCTTGCCTGCTCATCATACGATTCCACAGACAAGGCATCGATGCTAGATGAGATCATCGATTACGTGAAGTTCCTGCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGCGGTGCAGCTGCTGTCGCACCCCTTGTTGCTGATATGTCTTCTGAGGGTGGCGGTGACTGCATCCAAGCCAACGGCAACGGTAACCGCGGCGGTTCCCTCGCGCCGAATTCCAGCACCAACAACAACCAAACGACAGCGTCAACCTCGAACGACAGCCTCACCATGACGGAGCACCAGGTAGCGAAACTGATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTTCAAGGCAAGGGCCTTTGCCTCATGCCCATTTCTCTTGCCACTGCCATCTCCACTGCCACGTGTCACACCAGGAACCCCTTGATCAACGCCGCCTCCGGTAGCACCCAGATTCCGACCAACGCGGCCCCTGGCACACTCGTCAACCCCGCCGTTGCGTCCAACGGCGAAGGCCCGTCCTCCCCGAGCATGTCCGTGCTGACGGTGCAGTCGGCCGTGGTGGGCAACGACGGCGCCGTGAAGGAGGCTGCCTCCGTTTCGAAGCCGTGA 1551 0.5661 MQPCSREMQGINSLFNSSSQISLQDLHTTTAAAAAANQIQNSHINHHHQQPLQLPHFDPTSQDDFLDQMFSSCSWPDLNPNKSLWDPNTLSDQTTPSDNDNTNNTNNNNVAFPYDEPSTLASKFRNHQITASSTKNAAAALMLQHQLLMSRDSPLLHMPLSLPQNDVVDASSFKSPNPGGETSVQALYNGFAGSLHGAGQASNQTQHFQHPQGSSNPMQGQNFGAAGTGAATNQAPASGAAAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKVNAHVNVTRKLERKEWIVMSRSGGAVSVCLACSSYDSTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADMSSEGGGDCIQANGNGNRGGSLAPNSSTNNNQTTASTSNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAASGSTQIPTNAAPGTLVNPAVASNGEGPSSPSMSVLTVQSAVVGNDGAVKEAASVSKP 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00749 516 SMART finulus 260 346 IPR011598 GO:0046983
Vimu10g00749 516 MobiDBLite consensus disorder prediction 195 260 - -
Vimu10g00749 516 MobiDBLite consensus disorder prediction 375 405 - -
Vimu10g00749 516 Pfam Helix-loop-helix DNA-binding domain 259 341 IPR011598 GO:0046983
Vimu10g00749 516 MobiDBLite consensus disorder prediction 84 112 - -
Vimu10g00749 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 254 340 IPR011598 GO:0046983
Vimu10g00749 516 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 116 444 - -
Vimu10g00749 516 MobiDBLite consensus disorder prediction 196 240 - -
Vimu10g00749 516 Gene3D - 249 348 IPR036638 GO:0046983
Vimu10g00749 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 252 351 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00749 Vimu-Chr10 6526114 6529396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00749 243 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 55.172 1.50e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu10g00749 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00749 - - gmx:100807286 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00749 10 6526114 6529396 Vimu10g00749 10 6526114 6529396 ECH