Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00744 ATGCAGCAGGGTGATCCAACTGTTCTAAGCTTGAGGCCTGGCGGTGGTCGTGGCGGCAGAAGCAGGCTTTTCGCTCTCTCCTCTTCATCGTCCTCCCCTTTCCCTCCCTCCGTCGATCTTTCTCTCTCGCGCCCCCATGCGTTTTTCTCTCTCAAGACCGGAGATTCACGTTTTGAGGTTCGTGAGCGTGTGCAATATACCAGAGATCAACTTTTAGAGCTTGGCAAGGCTGTTGAAGTCCTTGATGATATTCTGAAAATTAAGCAAGATATAGGAGCTGAACTTTTTGGTGAAAATCAAAGTTCGGGCGGCCGAGCTGACAGCAATCTTCCTCATCAACTACCAAACCGGTATTCTGAGTTAGACAATCGTGATTGGCGAGGTCGTTCTGGACAACTTCCTGCTAGTCAAGATGAGAAGTCTTGGGAAAACCTCAGAGATAACAGTAGTCAGATTAATCGCCAAGACCATCTTAATTCCCAGTTTGCAAGGACACAGATATCTTCTACCCAAGGGGGAGGACCTACTCCTACACTAGCCAAGGCTGAGGTTCCTTGGTCAGCCAGAAGGGGAAGTCTATCTGATAAGGATCGTGTCTTAAAAACTGTGAAAGGAATTCTGAATAAGTTAACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATTGATTCTGGCATTACCTCTGCTGACATCTTGAAGGATGTCATTTCACTTATTTTTGACAAGGCTGTTCTAGAACCAACATTTTGCCCAATGTATGCTCAGCTGTGTTCTGATCTGAATGAAAAACTGCCTCCATTCCCATCTGGGGAACCTGGTGGGAAGGAAATCACCTTTAAGCGAGTATTATTGAATAATTGCCAGGAGGCATTTGAAGGTGTAGAACTAAAAAGGATGGCTGCCCCTGAGCAGGAGATGGACCGTACGGACAAGGAAAGACTGCTCAAGCTTCGGACTCTTGGAAATATCCGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTCCCTGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGACCCCCAGACAGCAAGTCTTGTCCTGTCGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAACACTATTGGCAAGCAGCTTGATGAGGGTCCTAAATCGCGGCGTATAAATGATATTTACTTTAGTCGATTGAAAGAATTGAGCTCAAATCTACAACTTGTACCCCGGATAAGGTTCATGATTCGGGATGTTCTAGAGTTACGTGCTAATAACTGGGTGCCTAGACGGGAAGAGATCAAAGCCAAAACCATTACTGAAATTCATTCAGAAGCTGAAAAGAATCTTGGTTTGCGACCGGGTGCCACCGCGAGTATGAGAAACACCCGTGGTGGTGTTCAAGGAAATTTCAGCCCTGGGGGCTTCCCTATTTCCCGACCTGGTACAGGGGGTTTGATGCCTGGAATGCCAGGGACCAGGAAGATGCCTGGGATATCTGGATTTGATAATAACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGACTTCTCAGGTGTTCAATCTGCTGGATCCAGCAGCCCTTTACTTTCCAAGTCCACAATCCTTAATTCAAAATTGCTTCCTCAAGGGAGTAGTGGAATTATAAGTGGAAGAAATAGTGCCTTAGTGCATGGAGCTGCTACATCTTCTGCTCGACCAGCAAACTTCAGTTTAGGCCATGAGACAGCACCTCAGCTCTCTTCACATGATAGAACTGTTGCTCCTGTTCCTGTATCCTCTGAGAAGCCACAAGCACCTGCCAGTGGATTGAATACTGATGATCTTCGCCGCAGAACTATCTCTCTTCTAGAAGAATATTTCAGTGTTCGAATTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTGAAATCTCCTTCTTATCACCCTGAGGTTGTTAAGGAAGCCATTTATCTTGCACTTGATAAAAGTCCACCATGTGTTGAACCTGTAGCCAATCTCATGGAGTATCTATACATTAAGAAGATTCTTACTGTTATAGATATTGAGGCAGGCTGTTTGTTATTCGGTTCTCTACTGGATGATATAGGCATAGATTTACCTAAAGCACCTAGTAATTTTGGTGTGATAATTGGGAAACTAATTTTGGTTGGGGGATTAGATTTTAAGGTGGCGAGAGACATTCTCAAGAAGGTGGAAGATGATATGTTCAAGAGAGCAATATTTGACAGTGCGGTAGGGACTATTAAATCTGCTGCATCCGGGCAATCAGTGTTGGATTTACAAACATCTGATATTGAGGCCTGTCAGAGTCTGCTCAAGTGA 2319 0.4455 MQQGDPTVLSLRPGGGRGGRSRLFALSSSSSSPFPPSVDLSLSRPHAFFSLKTGDSRFEVRERVQYTRDQLLELGKAVEVLDDILKIKQDIGAELFGENQSSGGRADSNLPHQLPNRYSELDNRDWRGRSGQLPASQDEKSWENLRDNSSQINRQDHLNSQFARTQISSTQGGGPTPTLAKAEVPWSARRGSLSDKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSGEPGGKEITFKRVLLNNCQEAFEGVELKRMAAPEQEMDRTDKERLLKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPPDSKSCPVEENVEAICQFFNTIGKQLDEGPKSRRINDIYFSRLKELSSNLQLVPRIRFMIRDVLELRANNWVPRREEIKAKTITEIHSEAEKNLGLRPGATASMRNTRGGVQGNFSPGGFPISRPGTGGLMPGMPGTRKMPGISGFDNNNWEMPKTRSMPRGDFSGVQSAGSSSPLLSKSTILNSKLLPQGSSGIISGRNSALVHGAATSSARPANFSLGHETAPQLSSHDRTVAPVPVSSEKPQAPASGLNTDDLRRRTISLLEEYFSVRILEEALQCVEELKSPSYHPEVVKEAIYLALDKSPPCVEPVANLMEYLYIKKILTVIDIEAGCLLFGSLLDDIGIDLPKAPSNFGVIIGKLILVGGLDFKVARDILKKVEDDMFKRAIFDSAVGTIKSAASGQSVLDLQTSDIEACQSLLK 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00744 772 MobiDBLite consensus disorder prediction 1 37 - -
Vimu10g00744 772 Pfam MA3 domain 607 718 IPR003891 -
Vimu10g00744 772 SMART ma3_7 607 719 IPR003891 -
Vimu10g00744 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 600 762 - -
Vimu10g00744 772 MobiDBLite consensus disorder prediction 497 527 - -
Vimu10g00744 772 ProSiteProfiles MI domain profile. 606 728 IPR003891 -
Vimu10g00744 772 Gene3D - 600 769 - -
Vimu10g00744 772 SMART if4_15 200 421 IPR003890 GO:0003723|GO:0005515
Vimu10g00744 772 Gene3D - 192 422 - -
Vimu10g00744 772 FunFam Eukaryotic translation initiation factor isoform 4G-2 191 422 - -
Vimu10g00744 772 MobiDBLite consensus disorder prediction 565 603 - -
Vimu10g00744 772 MobiDBLite consensus disorder prediction 101 116 - -
Vimu10g00744 772 SUPERFAMILY ARM repeat 601 758 IPR016024 -
Vimu10g00744 772 MobiDBLite consensus disorder prediction 23 37 - -
Vimu10g00744 772 SUPERFAMILY ARM repeat 194 424 IPR016024 -
Vimu10g00744 772 MobiDBLite consensus disorder prediction 513 527 - -
Vimu10g00744 772 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 56 768 IPR045208 GO:0003743
Vimu10g00744 772 MobiDBLite consensus disorder prediction 98 145 - -
Vimu10g00744 772 Pfam MIF4G domain 200 421 IPR003890 GO:0003723|GO:0005515
Vimu10g00744 772 MobiDBLite consensus disorder prediction 565 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00744 Vimu-Chr10 6451977 6457509 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00744 1 770 Eukaryotic Initiation Factors Gene Family AT5G57870 61.820 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00744 K03260 - gmx:100816500 1196.03