Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00731 ATGCAAGTTCCAATGGAGATTTTCAAGTGTTTCTACATCAATCTTCTTGCTACCTTCATCATATCAACAGTTTTAGCAATCGACCCTTACTCACAAGCACTTCTCAGCCTGAAAGATGAACTTGTAGATGATCATAACAGCTTGAGCAACTGGGTGGTACCCTCAGCAGGAAAATTAACTGGGAAGTACTATGTGTGTTCTTGGTCAGGTGTCAAGTGTGCCAATGGCTCAACCACTGTAACTTCTATAGACCTTTCCATGAAGAAACTGGGAGGTGTTTTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTCACTAATCTCAACCTCAGCTACAATTTCTTCTCAGGGCAGCTTCCAGCTGAGATTTTCAACCTCACCAGCCTCACAAGCCTGGACATCAGCAGAAACAACTTTTCTGGTTCCTTCCCTGGTGGAATTACTAGGCTCCAAAATTTGGTTGTACTTGATGCCTTTAGCAACAGTTTCTCAGGGTCATTGCCTGCTGAATTTTCACAGCTAGCAAACCTTAAAGTTCTCAATCTAGCTGGGAGCTACTTCAGAAATTCAATTCCATCTGAATACGGTTCTTTCAAAAGCCTTCAGTTTCTTCATCTTGCCGGAAATTCTCTTTCAGGAAGTATACCTCCTGAACTGGGTAACCTCAAAACAGTGACCCATATGGAGATTGGGTACAACCTATACCAGAGTTTTATTCCACCTGAACTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAATCTATCAGGCCACATACCAAAGCAACTCTCCAACCTCACCAGTTTGCAATCACTTTTCCTTTTCAGAAACCAGCTCTCAGGAACAGTGCCAAGTGAGCTCAGTAACATTGAATCCCTGGCAGATTTAGATCTCTCTGATAACTTCCTCTCAGGGTCCATTCCCGAAAGCTTCTCAATGCTAAAGAACCTAAGACTACTCAGTCTCATGTACAATGACATGAGTGGCATTGTTCCTGAAGGAATTGCTCAACTCCCATCCTTGGAAACTCTTCTCATTTGGAACAATCGCTTCTCTGGGTCACTTCCTCAGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGCTTCCACAAACAATTTAGTTGGAAGCATACCACCTGATATCTGTGTGAGTGGAGTACTGTTTAAGCTAATACTGTTTTCAAACAAATTCAAAGGCGATCTCTCATCAATCTCCAACTGTTCTTCACTCGTTCGCCTTCGCCTAGAAGATAATTCATTTTCAGGAGAAATCACTTTGAAATTCAGCCATCTTCCTGATATCGTATACGTCGATCTCTCCAGAAACAACTTTGTTGGTGGCATTCCCTCCGATATTTCTCAAGCCACTCAACTGGAGTATTTTAATGTCTCTTATAATCTGAAATTAGGAGGTACTATCCCTGCACAAACGTGGTATTTGCCCCAACTTCAAAATTTTTCAGCATCTTCTTGTGGTATTTCTGGTGATCTTCCCCTATTTGAGTCCTGCAAATCAATTTCAGTTATTGATCTTGATAACAATAACTTATCTGGGATCATCCCAAACAGTGCTTCCAAATGTCGAGCTCTTGAGAAAATCAACCTATCCTACAATAGCTTAACAGGTCATATACCTGATGAGCTTGCAAATATTCCTGTTCTTGTTGTGGTGGACCTATCAAACAACAAGCTCAATGGCCTCATACCTGCTGAGTTTGGTAGTTCTTCAAGTTTACAACTTCTGAATGTGTCTTTTAACAATATCTCCGGTTCAATACCCATAGGAAAGACATTCAAATTGATGGAAAAAAGTGCATTTATCGGAAATTCAGAGCTATGTGGAGCACCCCTGAGATCATGTCCTGATTCAGTTGGAATATTGGGCAGAAAAGGCCCGTGGAAGATTACACATATTGTGCTACTCTCTGTAGGGTTGCTAATAGTTCTTCTGGGATTAACTTTTGGAATATTTTATTTGAGAAGGGGGATAAAAAGTCAATGGAAGATGGTATCATTCGTGGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACGAGCCTCACTGCCACAAAACCAACAGAAGTTACATCACCATCACCAGCAGTTACAAAGGCTGTTCTGCCGACAGGAATAACAGTTTTGGTGAAGAAGATGGAGTGGGAAGCTAGGAGCATCAAGGTTGTGTCAGAATTCATAACGAGACTGGGAAATTCAAGGCACAAGAATTTAATCAGACTACTGGGGTTTTGCCACAACCAGCATTTAGTCTATCTTTTGTATGATTACTTACCCAATGGGAATTTGGCTGAGAAAATGGAAATCAAATGGGATTGGGCAGCAAAATTCAGAACAGTTGTTGGAATTGCAAGGGGACTCTGCTTTCTTCACCATGAATGTTACCCAGCAATACCCCACGGAGACTTGAAGCCTACCAACGTTGTATTTGACGAAAACATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAGGTTTTGAGGTTGAGCAAAGGCTCATCACCCACCATAACCAAGTGGGAAGCAGAATATGATGCTGCCACAAAAGAAGAACTGCGAATGGATATCTACAATTTTGGGGAGATGATTCTGGAAATATTAAGTGGCGGAAGGTTGAGAAATGCAGGAGGCAGCATACACAACAAACCATGGGAGGATCTCTTGAGAGAAATTTATAATGAGAATGAAGCAAAGTCCGCAAGTTCATTGGAAGAGATTAAACTGGTTCTTGAGGTTGCTATGTTTTGCACCAGAAGCAGGTCGTCAGATCAGCCATCAATGGAAGATGTTCTGAAGCATCTGTCAGGCCTAAAGCATATAGATGAAGGGCAATAA 2868 0.4188 MQVPMEIFKCFYINLLATFIISTVLAIDPYSQALLSLKDELVDDHNSLSNWVVPSAGKLTGKYYVCSWSGVKCANGSTTVTSIDLSMKKLGGVLSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLTSLTSLDISRNNFSGSFPGGITRLQNLVVLDAFSNSFSGSLPAEFSQLANLKVLNLAGSYFRNSIPSEYGSFKSLQFLHLAGNSLSGSIPPELGNLKTVTHMEIGYNLYQSFIPPELGNMSQLQYLDIAGANLSGHIPKQLSNLTSLQSLFLFRNQLSGTVPSELSNIESLADLDLSDNFLSGSIPESFSMLKNLRLLSLMYNDMSGIVPEGIAQLPSLETLLIWNNRFSGSLPQSLGRNSKLKWVDASTNNLVGSIPPDICVSGVLFKLILFSNKFKGDLSSISNCSSLVRLRLEDNSFSGEITLKFSHLPDIVYVDLSRNNFVGGIPSDISQATQLEYFNVSYNLKLGGTIPAQTWYLPQLQNFSASSCGISGDLPLFESCKSISVIDLDNNNLSGIIPNSASKCRALEKINLSYNSLTGHIPDELANIPVLVVVDLSNNKLNGLIPAEFGSSSSLQLLNVSFNNISGSIPIGKTFKLMEKSAFIGNSELCGAPLRSCPDSVGILGRKGPWKITHIVLLSVGLLIVLLGLTFGIFYLRRGIKSQWKMVSFVGLPQFTANDVLTSLTATKPTEVTSPSPAVTKAVLPTGITVLVKKMEWEARSIKVVSEFITRLGNSRHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKMEIKWDWAAKFRTVVGIARGLCFLHHECYPAIPHGDLKPTNVVFDENMEPHLAEFGFKQVLRLSKGSSPTITKWEAEYDAATKEELRMDIYNFGEMILEILSGGRLRNAGGSIHNKPWEDLLREIYNENEAKSASSLEEIKLVLEVAMFCTRSRSSDQPSMEDVLKHLSGLKHIDEGQ 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00731 955 SUPERFAMILY L domain-like 63 384 - -
Vimu10g00731 955 Gene3D Ribonuclease Inhibitor 508 626 IPR032675 -
Vimu10g00731 955 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Vimu10g00731 955 SUPERFAMILY Protein kinase-like (PK-like) 708 949 IPR011009 -
Vimu10g00731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 769 953 - -
Vimu10g00731 955 Gene3D Ribonuclease Inhibitor 185 281 IPR032675 -
Vimu10g00731 955 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Vimu10g00731 955 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 307 946 - -
Vimu10g00731 955 Pfam Protein tyrosine and serine/threonine kinase 715 945 IPR001245 GO:0004672|GO:0006468
Vimu10g00731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 193 296 - -
Vimu10g00731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 315 628 - -
Vimu10g00731 955 Gene3D Ribonuclease Inhibitor 282 389 IPR032675 -
Vimu10g00731 955 Gene3D Ribonuclease Inhibitor 390 504 IPR032675 -
Vimu10g00731 955 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Vimu10g00731 955 Gene3D Transferase(Phosphotransferase) domain 1 767 954 - -
Vimu10g00731 955 SMART serkin_6 708 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00731 955 FunFam Leucine-rich repeat receptor-like protein kinase TDR 684 768 - -
Vimu10g00731 955 SMART LRR_typ_2 557 580 IPR003591 -
Vimu10g00731 955 SMART LRR_typ_2 270 294 IPR003591 -
Vimu10g00731 955 SMART LRR_typ_2 198 222 IPR003591 -
Vimu10g00731 955 SMART LRR_typ_2 102 126 IPR003591 -
Vimu10g00731 955 SMART LRR_typ_2 318 341 IPR003591 -
Vimu10g00731 955 SMART LRR_typ_2 342 366 IPR003591 -
Vimu10g00731 955 FunFam Leucine-rich repeat receptor-like protein kinase 27 192 - -
Vimu10g00731 955 ProSiteProfiles Protein kinase domain profile. 673 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00731 955 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Vimu10g00731 955 SUPERFAMILY RNI-like 287 598 - -
Vimu10g00731 955 Gene3D Phosphorylase Kinase; domain 1 704 766 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00731 Vimu-Chr10 6297191 6301615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00731 11 946 Receptor kinase-like Gene Family AT5G51350 54.171 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g00731 PK_Tyr_Ser-Thr 4.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00731 - - gmx:100782323 1592.79