Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00715 ATGGCTTTTCACGACCATATGGCGCACGAAATCACGTTTCAGCCCTTCACGGAGGAGCAGCAGATGGGTCAGGGCAGAGACATGCAGCGCCTGCTGCCGCTCTCCGCCGGAGCACCCACGTGGCTCAACGGCAGCAACGCGGCCACGCTTCGGCAGCAGAATTTCCTCCACCTGCAACCGGAGTCGGCCACGGCGCAGCCTAACGACGACGTTCGAGGGGGCATAGATCGGAACCGGACGGAGAGCAACTCGGAACCGGACGATTTGGCGGAATACAAAGCAGACATTCTGGGACACCCTCTTTACGATCAACTCCTATCGGCTCACGTCTCGTGTCTGAGGATCGCCACGCCCGTTGACCAGCTTCCACGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGACAAGTACTCTGGCCTCGGAAACGGCGTCGTGGATGACAAAGAGCTTGATCAATTCATGACGCATTATGTTATACTGCTATGTGCTTTCAAAGAACAACTGCAACAACATGTTCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTTGAGCAATCTCTACAAACCTTGACTGAGAGGACCAAGCATGCATGGCATGAATCTGGTGCCATGCTATCAAAATTTATGATTTCTGATTTCGTCATTTTGCAAACTTATAGAAAGAGAAGTGTATCTCCCGGAGAAGGAACGGGTGCAACGATGTCAGACGATGAAGAAGACCAGGCTGAGAGTAATGCCAACTTATACGAAGGAAGCATGGATGGTGCTGATAGTCTCAGCTTTGGACCTCTTGTTCCCACAGAAACTGAAAGATCTTTGATGGAACGTGTTAGGCAGGAGTTGAAGCATGAGCTAAAACAGGGTTACAAGGAGAAGATTGTCGACATAAGAGAAGAAATTCTAAGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCGCTTTTAAAAGCTTGGTGGCAGTCACATTCCAAATGGCCATATCCAACAGAAGAAGACAAGGCAAGGTTGGTGCAGGAAACAGGCTTGCAACTAAAGCAGATAAACAACTGGTTCATAAATCAAAGGAAAAGGAATTGGCATACGAATCCTTCGTCTTCTAGTGGCTCCAAAAGCAAACGCAAGAGAGGGAAAAACATGAAACTGAAATGTTGGAATATGGATGATACCAAGATGTATTTGGGAATTACTTGTATTGTTGTATATGAGGCTGCTGAGTTGATACCTGATATTGTTGCTGCCATTATCTATTCGGTTCAATGGGTATCTTTGAATGCATGCTGA 1302 0.4846 MAFHDHMAHEITFQPFTEEQQMGQGRDMQRLLPLSAGAPTWLNGSNAATLRQQNFLHLQPESATAQPNDDVRGGIDRNRTESNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVVDDKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQTLTERTKHAWHESGAMLSKFMISDFVILQTYRKRSVSPGEGTGATMSDDEEDQAESNANLYEGSMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSGSKSKRKRGKNMKLKCWNMDDTKMYLGITCIVVYEAAELIPDIVAAIIYSVQWVSLNAC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00715 433 MobiDBLite consensus disorder prediction 365 385 - -
Vimu10g00715 433 ProSiteProfiles 'Homeobox' domain profile. 305 368 IPR001356 GO:0003677
Vimu10g00715 433 Pfam Homeobox KN domain 325 364 IPR008422 GO:0003677|GO:0006355
Vimu10g00715 433 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Vimu10g00715 433 SMART ELK_2 285 306 IPR005539 GO:0003677
Vimu10g00715 433 Gene3D - 304 383 - -
Vimu10g00715 433 MobiDBLite consensus disorder prediction 72 87 - -
Vimu10g00715 433 FunFam homeobox protein knotted-1-like 3 isoform X1 306 367 - -
Vimu10g00715 433 MobiDBLite consensus disorder prediction 229 248 - -
Vimu10g00715 433 Pfam KNOX1 domain 92 133 IPR005540 GO:0003677|GO:0005634
Vimu10g00715 433 SMART KNOX2_2 142 197 IPR005541 GO:0003677|GO:0005634
Vimu10g00715 433 Pfam ELK domain 285 306 IPR005539 GO:0003677
Vimu10g00715 433 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 372 - -
Vimu10g00715 433 ProSiteProfiles ELK domain profile. 285 305 IPR005539 GO:0003677
Vimu10g00715 433 CDD homeodomain 308 369 IPR001356 GO:0003677
Vimu10g00715 433 Pfam KNOX2 domain 146 196 IPR005541 GO:0003677|GO:0005634
Vimu10g00715 433 SUPERFAMILY Homeodomain-like 307 371 IPR009057 -
Vimu10g00715 433 SMART HOX_1 307 372 IPR001356 GO:0003677
Vimu10g00715 433 MobiDBLite consensus disorder prediction 59 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00715 Vimu-Chr10 6208924 6213981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00715 73 382 Homeobox Transcription Factor Family AT5G25220 71.160 3.89e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vimu10g00715 KNOX2 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00715 - - gmx:100816347 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00715 10 6208924 6213981 Vimu10g00715 10 6208924 6213981 ECH
Vimu7g01142 7 11086758 11091080 Vimu10g00715 10 6208924 6213981 PCT