Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00712 ATGGCTGGAATGCTTCCAGGAGTTGAATGTGCAAGAAGAAGAAGATTCCATAGTTGCTTGGATTCAAACTCAACTTCTTTAGCTTCACATCTATCCACAAGGCGCTCTTCTTTTGGTTTGTATGCAAGTAACTTTTCCTTGTCTACTTCACAGCAAAGAGGCATGTTATACCAGACACACCCAGATGAGGATATGGCAGGAGCTGCCAGAGAAGCCAGACAAAGATTGGATGACAAGTTTAGAGCACAAAGGATGTCAGATAACAAAAGGCAAAAGAGTACAACATGTGTGGAGGGTGGAAGAAGAAGCATAACAGAGTTGCACAGAGAGGTATATGGGTCAAAGAAAAGTGGTGCAAGGAAATTCAGTTGGAGTAGATGGAGCTGGAAGGCCTCTGAACAAGAGGACTGTGCAGTGTGCTTGGAATCATTCAGGGTTGGAGAGACACTGATCCATCTTCCTTGTGCACATAAGTTCCATGACAGATGCTTGAAACCATGGTTGGAAAACAATTCTCATTGTCCATGTTGCAGAACAACCATTCTTTCCCTCTCTAGTTAA 561 0.4332 MAGMLPGVECARRRRFHSCLDSNSTSLASHLSTRRSSFGLYASNFSLSTSQQRGMLYQTHPDEDMAGAAREARQRLDDKFRAQRMSDNKRQKSTTCVEGGRRSITELHREVYGSKKSGARKFSWSRWSWKASEQEDCAVCLESFRVGETLIHLPCAHKFHDRCLKPWLENNSHCPCCRTTILSLSS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00712 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 184 IPR013083 -
Vimu10g00712 186 PANTHER SI:CH211-59O9.10 9 183 - -
Vimu10g00712 186 SMART ring_2 137 177 IPR001841 -
Vimu10g00712 186 ProSiteProfiles Zinc finger RING-type profile. 137 178 IPR001841 -
Vimu10g00712 186 Pfam Ring finger domain 136 178 IPR001841 -
Vimu10g00712 186 SUPERFAMILY RING/U-box 124 182 - -
Vimu10g00712 186 CDD RING-H2_PA-TM-RING 136 178 - -
Vimu10g00712 186 FunFam Zinc finger family protein 111 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00712 Vimu-Chr10 6159186 6160660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00712 1 81 C3H Transcription Factor Family AT2G15580 47.368 4.21e-18 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00712 - - gmx:100527583 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00712 10 6159186 6160660 Vimu10g00712 10 6159186 6160660 ECH