Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00709 ATGTGTGTGCAGGATGCAGACAAAGATATGGATAACAGCTCAACAAATTCATGGCCTTTGCATTGTCACCTTTTGCTCGCCACCCACATGGACAAAAAAGGATCTTTTTTCAGAACTTCAACTCCTGACACCACAGATACCACTGTCCAAAGTTCCTTTCCTCTAGAAAGCATTTATGAGGACGAAGTGATTGCAGAAAAGAAAGAAAATCAGATGAATTTGGCCCCGGCTCTTCGGTCTGGAGAGTGGTCTGACATAGGAGAACGCCCTTACATGGAGGACACTCATATATGCATTGGAGACTTGGCAAAGAAATTTAATTATAATGCACTTCCTGGGGAAGCTGTTTCCTTTTATGGCGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTACGTGATAATCTGCCAAGATTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGATCAAAAGGTCATTTTTGGAGACTGACGCTGCATTTCTAAAATCATCCTCTCAGGAACCTTCCCTTTCTTCTGGCACAACTGCTTTAACTGCATTTGTATTTGGAAGAACCATGGCATATATTTTCCTTCCCATAAATCTAGTGACATTGTCATACAATAAGTGTAGTAGCTGTGAAAATGGCACATTGACATTCAAGTCAAAGGAGGAGCCTGATATCAACATCATCTCTTATGATTTATACTTGTATGAATCTGTGCCCCTTTTCATTCATTTGCACAGGTCTTTACTTGTAGCTAATGTGGGAGACTGTCGAGCTGTCTTGTCCCGCCATGGACGGGCCATAGAAATGTCTAAAGATCATAGGCCAAACTGTGTCAATGAAAGGACACGGGTTTTGTCCCTAGGTGGCTTCATTGATGATGGTTACCTGAATGGCCAGTTAGGTATCACTCGTGCTATTGGAGACTGGCACCTTGAAGGAATGAAGGGAACGAGTGGAAGAGAAGGACCACTGAGTGCTGAACCTGAACTTAAAATGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGCTAGTGACGGAATATGGGATGTTTTCAGTAGCCAAAATGCTGTGGATTTTGCTAGGAGGAGGCTACAAGAGCACAATGATGAGAAACTATGCTGCAAGGAAATAGTGCAGGAAGCAATGAAGAGAGAATCAACTGATAACTTGACAGTTGTGATGGTATGTTTTAACTCAGATCCTCCAACACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGAAGCATATCTGCAGAAGGACTTCAGAATCTAAGATCCCTGCTAAAAGAATAA 1308 0.4182 MCVQDADKDMDNSSTNSWPLHCHLLLATHMDKKGSFFRTSTPDTTDTTVQSSFPLESIYEDEVIAEKKENQMNLAPALRSGEWSDIGERPYMEDTHICIGDLAKKFNYNALPGEAVSFYGVFDGHGGKSAAQFVRDNLPRFIVEDVNFPLELEKVIKRSFLETDAAFLKSSSQEPSLSSGTTALTAFVFGRTMAYIFLPINLVTLSYNKCSSCENGTLTFKSKEEPDINIISYDLYLYESVPLFIHLHRSLLVANVGDCRAVLSRHGRAIEMSKDHRPNCVNERTRVLSLGGFIDDGYLNGQLGITRAIGDWHLEGMKGTSGREGPLSAEPELKMMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEAMKRESTDNLTVVMVCFNSDPPTPVVVERTRVRRSISAEGLQNLRSLLKE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00709 435 PANTHER PROTEIN PHOSPHATASE 2C 66 400 IPR015655 GO:0004722|GO:0006470
Vimu10g00709 435 SMART PP2C_4 69 400 IPR001932 -
Vimu10g00709 435 Pfam Protein phosphatase 2C 248 394 IPR001932 -
Vimu10g00709 435 Pfam Protein phosphatase 2C 91 193 IPR001932 -
Vimu10g00709 435 SUPERFAMILY PP2C-like 72 404 IPR036457 -
Vimu10g00709 435 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vimu10g00709 435 CDD PP2Cc 79 402 IPR001932 -
Vimu10g00709 435 Gene3D - 61 406 IPR036457 -
Vimu10g00709 435 ProSiteProfiles PPM-type phosphatase domain profile. 79 402 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00709 Vimu-Chr10 6143431 6146461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00709 60 433 PP2C-type Phosphatase Gene Family AT2G25620 46.174 5.55e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vimu10g00709 PP2C 2.3e-48 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00709 K14803 - gmx:121172626 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00709 10 6143431 6146461 Vimu10g00709 10 6143431 6146461 ECH
Vimu7g01132 7 11041847 11044670 Vimu10g00709 10 6143431 6146461 PCT