Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00708 ATGGCTGAACAGACAGAGAAGGCTTTTCTAAAGCAACCGAAAGTGTTTCTATGCTCTAAGAAAGGTGGAAAGGGAAAGAGGCCAGGGAAAGGTGGGAATCGCTTTTGGAAATCAATTGGTCTTGGATTCAAGACTCCCAGAGATGCCATTGAAGGGACCTACATTGACAAGAAGTGCCCTTTCACGGGCAATGTTTCCATCCGGGGTCGTATCTTAGCTGGTACATGTCACAGCGCTAAGATGACAAGGACCATCATTGTCCGGAGGAACTATCTTCATTTTATTAAGAAATACCAGAGATATGAAAAGCGTCATTCAAATATTCCTGCACACATATCTCCTTGTTTCCGCGTTAAAGAAGGAGATCACGTTATTATAGGCCAATGCAGGCCAATATCAAAGACAGTGAGGTTCAATGTGTTGAAAGTAATTCCAGCTGGATCCTCTAGCGGTGCAAAGAAGGCATTTACTGGAATGTGA 480 0.4354 MAEQTEKAFLKQPKVFLCSKKGGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSSGAKKAFTGM 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00708 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 10 150 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu10g00708 159 Gene3D - 1 158 - -
Vimu10g00708 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
Vimu10g00708 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Vimu10g00708 159 NCBIfam 30S ribosomal protein S17 55 143 IPR028333 -
Vimu10g00708 159 FunFam 40S ribosomal protein S11 1 158 - -
Vimu10g00708 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Vimu10g00708 159 Pfam Ribosomal protein S17 74 142 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu10g00708 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu10g00708 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Vimu10g00708 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00708 Vimu-Chr10 6132688 6134833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00708 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 88.679 2.19e-96 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00708 K02949 - gmx:100500186 317.39