LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g00700	ATGGATGCAAAGTCTATTAGGATGGATAAAGATATTAGGGGAAAAACTTGTATTTACTGGAAAGCTGGGAGATGTAATAGAAATTCATGCAAATTTAGGCATGGAGAAACACCTTCCTCAAATACTTCGTATCTCGGTATCAATGTCAAAAGCAAAATTTGTGGAAAAAAACGTCATCCATCCTATAAGATTGTTTCCAAGGATAAACCCAACAAAACTTTGGTTCAAAAGGATGGAGACAATGAAGATCAAACAAATGTTGTAAAGGTTATAACTGGACTTACACTTCTAGCTGGAATCAACAAACTTTATTCTGGTAGCATTGATGGAACCGTTCAGATATGGGATTGCCATACAGGTCAATGCATTAAAGTCATACACTTTGGCACAGAGGTTAACTCTTTGATAAGTGAGGGGTTGTGGATTTTTATCGGTTTGAAAAATGTTATAAAGGCTTTGAATACCGAGAACAATATAGAATTCACTCTTGATGGACCCAATATAGGACGAATCTTTCACATGACTGTTGGAAACAACATCCTTTTTGCTGGGGCAGAGGATGGTGTCATTACTGCCAGGAGAGAAAACTCTAAAACTAAGTCACCTTTTGAATTGGTTGACTCACTGATCGGCCATACTAAATCAGTGGTTTGCCTAACTGTTGGACATAATATGTTGTACTCAGGATCCATTGACCAAAGTATAAAGGCCTGGGACATGGATACATTACAATGTACAATGACACTCAATGAACATACTGGTGTAGTCACATCCCTTCTTTGTTGGGAGCATTATTTGTTTTCAAGTTCATCTGACGGCACAATTAAAATCTGGGAATGCAAGGAAGTGGGAACTAATTTGACTGTGGTATATACACACAAGGAGCAAAGTGGTATTATATCACTTTTTGGGATGCATGATGCAAATGGAAAACCAATATTGTTTTCCTCTTATACAAACAATTTAGTTTGCATGTACGAATTGCCATCATTTTCGGAGAGGGGTCGTTTATTTGCTAAGAAAGACATTACATCATTTGAATTAGGCGTTGATGGAGGACTCTTCTTCACTGGAGATAGGACTGGTTTGCTTAAAGTATGGAAATGGAATGAGTTACCTAAGGTGACATCTAATTAA	1137	0.3729	MDAKSIRMDKDIRGKTCIYWKAGRCNRNSCKFRHGETPSSNTSYLGINVKSKICGKKRHPSYKIVSKDKPNKTLVQKDGDNEDQTNVVKVITGLTLLAGINKLYSGSIDGTVQIWDCHTGQCIKVIHFGTEVNSLISEGLWIFIGLKNVIKALNTENNIEFTLDGPNIGRIFHMTVGNNILFAGAEDGVITARRENSKTKSPFELVDSLIGHTKSVVCLTVGHNMLYSGSIDQSIKAWDMDTLQCTMTLNEHTGVVTSLLCWEHYLFSSSSDGTIKIWECKEVGTNLTVVYTHKEQSGIISLFGMHDANGKPILFSSYTNNLVCMYELPSFSERGRLFAKKDITSFELGVDGGLFFTGDRTGLLKVWKWNELPKVTSN	378

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g00700	378	ProSiteProfiles	Trp-Asp (WD) repeats profile.	103	125	IPR001680	GO:0005515
	Vimu10g00700	378	PANTHER	-	36	375	IPR044715	-
	Vimu10g00700	378	ProSiteProfiles	Trp-Asp (WD) repeats profile.	209	248	IPR001680	GO:0005515
	Vimu10g00700	378	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	209	242	-	-
	Vimu10g00700	378	PRINTS	G protein beta WD-40 repeat signature	103	117	IPR020472	-
	Vimu10g00700	378	PRINTS	G protein beta WD-40 repeat signature	266	280	IPR020472	-
	Vimu10g00700	378	PRINTS	G protein beta WD-40 repeat signature	226	240	IPR020472	-
	Vimu10g00700	378	SMART	WD40_4	81	116	IPR001680	GO:0005515
	Vimu10g00700	378	SMART	WD40_4	330	368	IPR001680	GO:0005515
	Vimu10g00700	378	SMART	WD40_4	242	279	IPR001680	GO:0005515
	Vimu10g00700	378	SMART	WD40_4	202	239	IPR001680	GO:0005515
	Vimu10g00700	378	ProSiteProfiles	Trp-Asp (WD) repeats profile.	249	279	IPR001680	GO:0005515
	Vimu10g00700	378	Pfam	WD domain, G-beta repeat	205	239	IPR001680	GO:0005515
	Vimu10g00700	378	Pfam	WD domain, G-beta repeat	244	278	IPR001680	GO:0005515
	Vimu10g00700	378	ProSiteProfiles	Zinc finger C3H1-type profile.	11	37	IPR000571	GO:0046872
	Vimu10g00700	378	Gene3D	-	88	142	IPR015943	GO:0005515
	Vimu10g00700	378	SUPERFAMILY	Quinoprotein alcohol dehydrogenase-like	91	371	IPR011047	-
	Vimu10g00700	378	Gene3D	-	150	377	IPR015943	GO:0005515
	Vimu10g00700	378	ProSitePatterns	Trp-Asp (WD) repeats signature.	226	240	IPR019775	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g00700	Vimu-Chr10	6035590	6037663	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g00700	101	248	Eukaryotic Initiation Factors Gene Family	AT2G46290	23.810	1.73e-06	47.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g00700	-		-	vun:114180241	583.178