Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00698 AGTATTATGGATGCAAAGTCTATTAGGATGGATAAAGATATTAGTGGAAAAACTTGTATTTACTGGAAAGTTGGGAGATGTAATAGAAATCCATGCAAATTTAGGCATGCAGAAACACCTTCCCCACATACTTCATATCCCGGTATCAATGTCAAAAGCAAAATTTGTGGAAAAAAACGTCATTCATCTTATAAGATTGTTTCCAAGGATAAACTAAACAAAACTTTGGTTCAAAACAATGGAGAAAAAGAAGATCAAACAAATGTTGTAAAGGTGTCCAAGAAAATATCTCCAAATATATGCAAATATTGGATCAACAACATGTGTGTGTATGGTGAAAAGTGCTTCAATTTGCATTCATGGTATCATGGTGATGGATTTTCCACCTTAGCAGAACTTCACCAACACAAAAAGGTTATAACTGGAATTGCACTTCTAGCTGGAACAAACAAACTTTATTCCGGTAGTATTGATGGGACCGTTCAGATATGGGATTGCCATACAGGTCAATGCATTAAAGTCATACGTTTTGGCACAGAGGTTAACTCTTTGATAAGTGAGGGACTATGGATTTTTGTCGGTTTGAAAAATGTTATCAAGGCTTTGAATACCGAGACCAATATAGAGTTCACTCTTGATGGACCCAATATAGGACGGATCTTTCACATGACTGTTGGAAACAACATCCTTTTTGCTGGGACAGAGGATGGTGTCATTACTGCCTGGAGAGTTAACTCTGAAGCTAAGTCTACTTTTGAATTTGTTGACTCACTGATCGGCCATACTAAATCAGTGGTTTGCCTAACTGTTGGACGTAATATGTTGTACTCGGGATCCATTGACCAAAGCATAAAGGCCTGGGACATGGATACATTACAATGTACAATGACACTCAATGAGCATACTGGAGTAGTCACATCCCTTCTTTGTTGGGAGCATTATTTATTTTCAAGTTCATCTGACGGCACAATTAAAATCTGGGAATGCAAGGAAGTGGGAAATAATTTGACTGTGGGTATTATATCACTTTTTGGGATGCATGATGCAAATGACAAACCAATATTGTTTTCCTCTTGTACAAACAATTTAGTTTGTATGTACGAATTGCCATCATTTTCGGAGAGGGGTCGTTTATTTGCTAAGAAAGACATTACATCATTTGAATTAGGCGTTGATGGAGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTTAAAGTATGGAAATGGAATGAGTTACCTAAGGTGACATCTAATTAA 1260 0.3722 SIMDAKSIRMDKDISGKTCIYWKVGRCNRNPCKFRHAETPSPHTSYPGINVKSKICGKKRHSSYKIVSKDKLNKTLVQNNGEKEDQTNVVKVSKKISPNICKYWINNMCVYGEKCFNLHSWYHGDGFSTLAELHQHKKVITGIALLAGTNKLYSGSIDGTVQIWDCHTGQCIKVIRFGTEVNSLISEGLWIFVGLKNVIKALNTETNIEFTLDGPNIGRIFHMTVGNNILFAGTEDGVITAWRVNSEAKSTFEFVDSLIGHTKSVVCLTVGRNMLYSGSIDQSIKAWDMDTLQCTMTLNEHTGVVTSLLCWEHYLFSSSSDGTIKIWECKEVGNNLTVGIISLFGMHDANDKPILFSSCTNNLVCMYELPSFSERGRLFAKKDITSFELGVDGGLFFTGDGTGLLKVWKWNELPKVTSN 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00698 419 Gene3D - 119 206 IPR015943 GO:0005515
Vimu10g00698 419 ProSiteProfiles Zinc finger C3H1-type profile. 13 39 IPR000571 GO:0046872
Vimu10g00698 419 PANTHER - 56 416 IPR044715 -
Vimu10g00698 419 SMART WD40_4 251 288 IPR001680 GO:0005515
Vimu10g00698 419 SMART WD40_4 291 328 IPR001680 GO:0005515
Vimu10g00698 419 SMART WD40_4 371 409 IPR001680 GO:0005515
Vimu10g00698 419 SMART WD40_4 126 165 IPR001680 GO:0005515
Vimu10g00698 419 SMART WD40_4 205 243 IPR001680 GO:0005515
Vimu10g00698 419 ProSitePatterns Trp-Asp (WD) repeats signature. 275 289 IPR019775 -
Vimu10g00698 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Vimu10g00698 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 297 IPR001680 GO:0005515
Vimu10g00698 419 SUPERFAMILY WD40 repeat-like 104 410 IPR036322 GO:0005515
Vimu10g00698 419 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Vimu10g00698 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 291 - -
Vimu10g00698 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 328 IPR001680 GO:0005515
Vimu10g00698 419 Gene3D - 207 418 IPR015943 GO:0005515
Vimu10g00698 419 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Vimu10g00698 419 SMART c3hfinal6 15 38 IPR000571 GO:0046872
Vimu10g00698 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Vimu10g00698 419 Pfam WD domain, G-beta repeat 255 288 IPR001680 GO:0005515
Vimu10g00698 419 Pfam WD domain, G-beta repeat 293 327 IPR001680 GO:0005515
Vimu10g00698 419 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Vimu10g00698 419 Gene3D - 12 118 - -
Vimu10g00698 419 PRINTS G protein beta WD-40 repeat signature 315 329 IPR020472 -
Vimu10g00698 419 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Vimu10g00698 419 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00698 Vimu-Chr10 6025742 6027828 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00698 149 297 Eukaryotic Initiation Factors Gene Family AT2G46290 24.260 5.75e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00698 - - vun:114180241 650.203