Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00683 ATGCCTTGGCCAATTTTGGTCTATCGTGTGAGGACAGTTGAGCGTATTAGGCGCCTTGTTGAAGTAGTACCTTCGATGGCCGGGCAGCATCAGAGTCAGCAGCTAGCGGTAAGCTACTACAGTGGAGAACAAGTGGAAGGAATGCAGCAGCAGAGAGTTGAGGAAAGAATAGATGAAGGTGGGAAAAGGCGCATGATGAAAGGAGTGAAACTAATAGCTAAAGCATTGGAGGATGTGGAAAGGTCTGCCCGTAAGCAAGCGAGTGGCAAAGTAGGTTTTTTTGATTGCAACATATGCTTGTTAACAGCAAAAGATCCTGTCTTGACTTGCTGTGGTCACTTGTTTTGCTGGCCATGCTTTTATCACTTGCCATGTTCATGTTCCTGTGGAAATGCAAGGTTGTGTCCTGTTTGTGATGGAGAGGTCATTGAAACCAACATCACTCCAATTTATGGTAATTCCAGTGGCAGTGACGATTCTGATGTAGCTTCTTCCATAGTTCCTCCTCGACCTGCTGCACCCAGAATTAACAGTTTTAGCTATTACTTTTAG 552 0.4511 MPWPILVYRVRTVERIRRLVEVVPSMAGQHQSQQLAVSYYSGEQVEGMQQQRVEERIDEGGKRRMMKGVKLIAKALEDVERSARKQASGKVGFFDCNICLLTAKDPVLTCCGHLFCWPCFYHLPCSCSCGNARLCPVCDGEVIETNITPIYGNSSGSDDSDVASSIVPPRPAAPRINSFSYYF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00683 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 153 IPR013083 -
Vimu10g00683 183 SUPERFAMILY RING/U-box 95 144 - -
Vimu10g00683 183 SMART ring_2 96 138 IPR001841 -
Vimu10g00683 183 ProSiteProfiles Zinc finger RING-type profile. 96 139 IPR001841 -
Vimu10g00683 183 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 66 173 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00683 Vimu-Chr10 5871145 5872068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00683 46 179 C3H Transcription Factor Family AT3G58030 44.928 1.51e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00683 - - vra:106760098 288.115