Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00680 ATGTTGAAGGAGAAGGTAGGGAGCCGGCCCCCGTGGGTGGGGCTGGCCGCCGCCGTCTGGGTTCAGATCGCCGCCGGGAACACCCCCACCTTCCCACTTTATTCCCACTCCTTGAAATCAGTGCTGGGTTTCGACCAGCTCCACGTCACGCTCCTCGGTGTGGCCGTCGACGTCGGTGAAAACTTCAGCCTCCTCCCCGGCATCGCCTGCAACAAGTTCCCCCCTTGGCTCAACCTCCTCGTCGGTTCCCTCTCCGCCTTCCTCGGCTACGGCGTTGTGTACCTCGCCATCTCCCAGACCCTCCCATCCCTCCATTTCTTACTGCTATGGTTTTGTCTTCTTATTGCTGCTAACAGTACTGCGTGGTTCACCACCACGGTTCTGGTGACCAACATGAGAAACTTCCCTGCCAGCAGAGGCTCTGTCGCTGGGGTTCTGAAAGGTTATGGGGGACTTAGTGCTTCCGTTTTGACTGAGATTTACAGCATTCTGCTTCGTAACAGTTCCTCTAAGTACCTCCTGTTTCTTTCCCTTGGTATTCCTGCTATATGCTTGAGTATGATGTTTCTCGTTAGGCCCTGTACGCCGGCCACCGGTGATGACCCTGCGGAGCCTTACCATTTTCAGTTTGTCCAAGTTTCCAGTGTGATCCTGGGTGTTTACCTTCTTGTTAGTACCATACTTGGTAATGTCTACACGTTTAGCGATGCTCTTTCGTATGCTTTGGTGACCGTGATGGTTCTGCTTCTCATGGCTCCGCTTGCTGTCCCTTTGAAGATGACTCTGTTTCCAAGGAATGGGACTAAACCAGAGCAACAAGTTGGATCTTCTGAGTTTCTAAGTCAAGGGAAAGATGAGAGTGCGGCGCCGCTGCTGGCATCTTCGTCGACGGGGGCACTTGGGAGTTTTAATGATCAGGATGATTTGCCTGAGGTTGCCGAGCTTCTTGCCTTGGGTGAGGGGGCTGTGAAGCAGAAGAAGAGAAGGCCTAAACGTGGAGAAGATTTTAAGCTAACTGAGGCTATAGTGAAGGCTGATTTCTGGCTTCTGTTTTTGGTCTACTTTGTTGGCGTCGGCACTGGGGTTACTGTTCTCAACAATCTGGCCCAAATAGGTATTGCCCGAGGGGAGGAAGACACCACCACCTTGCTGTCAATTTTCAGCTTTTGCAATTTTCTGGGGCGGCTTGGTGGAGGAGTTGTATCAGAACATTTTGTCAGGACAAAATCACTTCCAAGAACTGTGTGGATGTTGTGCACGCAGATAATTATGCTCATTGTATACCTTCTGTTTGCCTATGCTATCAGTGGAACCCTTTACCCTGCAGTTGCATTCCTTGGTGTCTGCTATGGCGTGCAACTCTCCGTGATCATCCCCACTGTTTCTGAAGTTTTTGGTCTGAAGCACTACGGTGTACTGAGCAGCGTCATTGGGTTGGGGAATCCAATTGGTGCAGTGCTCTTTTCTGTTCTGCTAGCAGGGAACGTATACGATAGTGAGGCAGCAAAGCAGCATGGTATAGACCTTCTTGATTCTGGTGTTTCGTGCCTCGGTCCAAATTGCTTTAAGCTTACCTTTCTCATTCTTGCTGGGGTATGTGCCGTTGGCATCATCTTGAGCGTTGTCGTGACTTTGAGAATTAAGCCTGTTTATCGAATGCTTTATGCTGGAGGCTCTTTCAGGCACCCTCAGACATCTTCAAGTCACTAA 1710 0.5058 MLKEKVGSRPPWVGLAAAVWVQIAAGNTPTFPLYSHSLKSVLGFDQLHVTLLGVAVDVGENFSLLPGIACNKFPPWLNLLVGSLSAFLGYGVVYLAISQTLPSLHFLLLWFCLLIAANSTAWFTTTVLVTNMRNFPASRGSVAGVLKGYGGLSASVLTEIYSILLRNSSSKYLLFLSLGIPAICLSMMFLVRPCTPATGDDPAEPYHFQFVQVSSVILGVYLLVSTILGNVYTFSDALSYALVTVMVLLLMAPLAVPLKMTLFPRNGTKPEQQVGSSEFLSQGKDESAAPLLASSSTGALGSFNDQDDLPEVAELLALGEGAVKQKKRRPKRGEDFKLTEAIVKADFWLLFLVYFVGVGTGVTVLNNLAQIGIARGEEDTTTLLSIFSFCNFLGRLGGGVVSEHFVRTKSLPRTVWMLCTQIIMLIVYLLFAYAISGTLYPAVAFLGVCYGVQLSVIIPTVSEVFGLKHYGVLSSVIGLGNPIGAVLFSVLLAGNVYDSEAAKQHGIDLLDSGVSCLGPNCFKLTFLILAGVCAVGIILSVVVTLRIKPVYRMLYAGGSFRHPQTSSSH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00680 569 SUPERFAMILY MFS general substrate transporter 223 549 IPR036259 -
Vimu10g00680 569 CDD MFS_Mch1p_like 10 537 - -
Vimu10g00680 569 Gene3D MFS general substrate transporter like domains 342 550 IPR036259 -
Vimu10g00680 569 Pfam Nodulin-like 11 258 IPR010658 -
Vimu10g00680 569 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 12 552 - -
Vimu10g00680 569 SUPERFAMILY MFS general substrate transporter 13 196 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00680 Vimu-Chr10 5823980 5826232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00680 2 569 Nodulin-like Gene Family AT1G80530 54.657 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00680 - - gmx:100794012 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00680 10 5823980 5826232 Vimu10g00680 10 5823980 5826232 ECH
Vimu7g01121 7 10925885 10928406 Vimu10g00680 10 5823980 5826232 PCT