Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00675 ATGGGGAAGAAAAAGAAGCAGGCAGGAGAAACAAGTGAAGATAGAGGAGATCAGAAGAAGACAGAAGATGAAAGCTCCAGATCATATGACAACGATACTTTGGGGTTTATATCAATGGCTCAAGATTTGAAGGATGAAGGGAACAAGCTGTTTCAGAAGCGGGATGTTGAGGGGGCTTTGGCAAAGTATGAGAAGGCTCTGAAATTACTTCCAAGAAATCATCTTGATATTTCTTATTTGAGGAGTAACATGGCTGCGTGCTACATGCAGATGGGTCTTCGTGAGTATCCTAAAGCAATCAATGAATGCAATTTGGCTCTTGAAGCATCACCAAAATATAGTAAAGCTCTGATGAAGAGGGCAAGGTGCTATGAAGCTTTAAATAGGTTGGATTTTGCGCTGAGAGATGTTAGCACTGTTTTGAAGATAGAGCCAAATAATGTAATGGCATTGGAGGTCTCGGATAAGGTGAAGCATGCTCTTGAAGTTAAGGGATTAGTAGTAAACGATACGGAAATTGAGTTGCCTCCAGACTATGCTGGACCTCCTGATTTACGTCTGGAAGAAAAAGTTGACAAAGAAAAGATTCACAAGAAGAAGAAAAACAAAGAGAAGGTGAAGTCTACTGATAAAATTGAAGAAAAGAAAAGTGAGGAGAAATTAGATGAGAATAAAGATGAGGACAGTCGGAAAGATAAGAAGGCTAAGAAATATAAAAAGAAAAAGTCCAAGGGAAAAGATGTTGAGAAAAAAGATGATGTTAAGGAAGTTATTGAAGAAAAAAGTAACGGTAGAAGTGACAATATACCTAAGAAAGCAGCAAAACTTGTTTTTGGTGAGGATATAAGATGGGCTGAATTACCAGTGAATTGCAGCCTCTTTCAGCTAAGGGAAATTATTTGTGATCGTTTCCCTAGACTAGGAGCAGTTCTTGTCAAATATAAGGACCAAGAGGGTGATCTGGTCACTATCACTTCTGATGAAGAATTAAGGTGGGCTGAAACAGGATCACAGGGTTCTATTCGGCTGTACATAGTGGAAGTTAATCCAGAACATGATCCATTCTTTGTGAAGCTTAATGCAAAGAGTGGAGAAAAGGCCAGTATTGCTAATTCTCCTGTGAATGGATCTGTGGTGAAGGCAAAGGACATTATTTGCTCATCTTGTATTGAGGATTGGATAATTCAGTTTGCACAACTATTCAAGAACCATGTTGGGTTGGAAGCTGACAGATATTTATATTTTCATGAATTTGGTATGAAGCTCTATTCAGAGGTTGTGGAGGAGACAATTATAAGTGAGGAAGCTCAAGGCCTGCTTGATGTTGCTGAAGGTAAGTTCCAAGAGATGGCAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCCAGCGCAAGGAACAAAATTTATTTTACAGGAGATTCTTCTAAGGAGCATTTGCATGAACAAATCAGAAGTTTGTATGGATGGGCACACGAAGAATATGAAAAAGCTGGGGAGAAGTATGAAACAGCCATTGAAATTAAACCAGATTTGTATGAAGGCTTCTTGGCTCTAGGCCAACAGCTGTTTGAGCAAGCCAAGCTTTCTTGGAATTATGCACTCTGTTCTAAGGTAGATATATCAACATGGTCCTCCTCCACTGAGGTTCTTCAGCTTTACAACAGTGCTGAGGATAGTGTGGAGAAAGGAATGCTTATATGGGAAGAATCAGGAGAGCAGCAGTTGCTGGAAACTTCCAATCCGAAGGATATTTCCTTACATTTGAAGGACATGGGATTGGACAAACTATTCAAAAATATGTCAGCACATGAAATTGCTACGCAGGTGGCAGATACGAGGTCTCAAATGAATCTTCTGTGGGGTACCATACTGTATGAGCGCTCAATAGTGGAATTCAAGTTAGGGCTACCGGGATGGAATGAAACTCTTGAAGTTGCAGTTGAGAAGTTTCAACTTGCTGGAACTTCTACAACAGATATATCTGTAATGTTGAAGAATCACTGTTCAAATAACTCGGTTGTAGAAGGTCTTCGATTCAACATTGATGAAATAGTCCGACCATGGAATGAGATGTACAACGCTAAGAAGTTGCAGAAAGGTGTTCCATCATTCCGTTTGGAGCCCTTGTCTAGAAGAAGAATATCTAAAATATTCCATGCCTTTGAGCTTGTATGA 2181 0.3971 MGKKKKQAGETSEDRGDQKKTEDESSRSYDNDTLGFISMAQDLKDEGNKLFQKRDVEGALAKYEKALKLLPRNHLDISYLRSNMAACYMQMGLREYPKAINECNLALEASPKYSKALMKRARCYEALNRLDFALRDVSTVLKIEPNNVMALEVSDKVKHALEVKGLVVNDTEIELPPDYAGPPDLRLEEKVDKEKIHKKKKNKEKVKSTDKIEEKKSEEKLDENKDEDSRKDKKAKKYKKKKSKGKDVEKKDDVKEVIEEKSNGRSDNIPKKAAKLVFGEDIRWAELPVNCSLFQLREIICDRFPRLGAVLVKYKDQEGDLVTITSDEELRWAETGSQGSIRLYIVEVNPEHDPFFVKLNAKSGEKASIANSPVNGSVVKAKDIICSSCIEDWIIQFAQLFKNHVGLEADRYLYFHEFGMKLYSEVVEETIISEEAQGLLDVAEGKFQEMAALALFNWGNVHMSSARNKIYFTGDSSKEHLHEQIRSLYGWAHEEYEKAGEKYETAIEIKPDLYEGFLALGQQLFEQAKLSWNYALCSKVDISTWSSSTEVLQLYNSAEDSVEKGMLIWEESGEQQLLETSNPKDISLHLKDMGLDKLFKNMSAHEIATQVADTRSQMNLLWGTILYERSIVEFKLGLPGWNETLEVAVEKFQLAGTSTTDISVMLKNHCSNNSVVEGLRFNIDEIVRPWNEMYNAKKLQKGVPSFRLEPLSRRRISKIFHAFELV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00675 726 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Vimu10g00675 726 PANTHER PROTEIN CLMP1 3 724 IPR044517 -
Vimu10g00675 726 Coils Coil 198 218 - -
Vimu10g00675 726 MobiDBLite consensus disorder prediction 1 29 - -
Vimu10g00675 726 MobiDBLite consensus disorder prediction 206 233 - -
Vimu10g00675 726 SMART PB1_new 271 348 IPR000270 GO:0005515
Vimu10g00675 726 Gene3D - 273 347 - -
Vimu10g00675 726 ProSiteProfiles PB1 domain profile. 271 348 IPR000270 GO:0005515
Vimu10g00675 726 SMART tpr_5 78 113 IPR019734 GO:0005515
Vimu10g00675 726 SMART tpr_5 40 73 IPR019734 GO:0005515
Vimu10g00675 726 SMART tpr_5 114 147 IPR019734 GO:0005515
Vimu10g00675 726 SUPERFAMILY CAD & PB1 domains 273 356 - -
Vimu10g00675 726 MobiDBLite consensus disorder prediction 1 31 - -
Vimu10g00675 726 Gene3D Tetratricopeptide repeat domain 36 172 IPR011990 GO:0005515
Vimu10g00675 726 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Vimu10g00675 726 Pfam PB1 domain 275 346 IPR000270 GO:0005515
Vimu10g00675 726 SUPERFAMILY TPR-like 40 529 IPR011990 GO:0005515
Vimu10g00675 726 MobiDBLite consensus disorder prediction 173 252 - -
Vimu10g00675 726 CDD PB1 279 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00675 Vimu-Chr10 5777009 5779265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00675 21 147 Calmodulin-binding Proteins AT3G25230 33.333 2.71e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00675 10 5777009 5779265 Vimu10g00675 10 5777009 5779265 ECH
Vimu7g01108 7 10881911 10884177 Vimu10g00675 10 5777009 5779265 PCT