Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00668 ATGACGTCACGTTCGGGTCAGGGAAGCAGCGGAAGCAGCAGGACCCGTGTGGGGAAGTACGAGTTGGGTCGGACCCTGGGTGAGGGCAATTTCGCCAAGGTAAAGTTCGCCAGGCACGTGGAAAGCAGAGAGAGCGTCGCCATCAAGATTCTCGACAAGGAGAAAGTTCTCAAGCACAAAATGATTGATCAGATAAAACGGGAAATATCAACAATGAAACTTATTAGACATCCAAATGTCATACGTATGTATGAGGTAATGGCTAGCAAAACAAAGATATACATTGTATTGGAATTTGTGACTGGTGGAGAGCTGTTTGATAAAATTGCACGCAGCGGGAGGTTGAAAGAAGATGAAGCAAGAAAATATTTTCAACAGCTTATATGTGCTGTGGATTACTGCCATAGTAGAGGTGTTTTTCATAGAGACTTAAAGCCTGAGAATTTGTTGCTGGATGCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGCGGTACGCCAAATTATGTTGCCCCAGAGGTGATTCACAACAAAGGTTATGATGGTGCAAAGGCAGATCTGTGGTCATGTGGTGTTATTCTCTTTGTTTTAATGGCAGGCTATTTGCCCTTTGAAGAAACCAACCTAACGGCCTTATATAAAAAGATTTACAAAGCTGAGTTCACGTGTCCTCCATGGTTCTCTTCAAGTGCAAAGAAACTAATCAACAGAATACTTGATCCAAATCCTGCCACTAGGATTACATTTGCTGAGGTCGTTGAGAATGATTGGTTCAAGAAGGGATATAAGCCTCCCGTATTTGAACAGCCTACTGTTAGTCTTGATGATGATTCGAAAAATCTTGTAGTTGAGAGGCGTGAAGAGGAGGGGCATGTGGCACCTGTGACAATGAATGCCTTTGAACTTATATCTAAATCTCAAGGTCTCAACCTCAGTAGTCTGTTTGAGAAGCAAATGGGACTTGTTAAAAGGGAAACACGATTCACATCCAAATGTTCAGCAGATGAAATAATTTCAAAAATTGAGAAAGCCGCAGGACCCCTGGGTTTTGATGTTAAGAAGAACAACTGTAAGTTAAAGATTCAAGGGGAAAAGACTGGACGGAAAGGTCATCTATCTGTAGCCACTGAGATCTTGGAGGTAGCCCCTTCGCTATACATGGTTGAGCTGCGTAAGTCTCAAGGCGATACTCTGGAATTTCACAAGTTCTACAAAAATCTTGCTACTGGGCTGAAAGACATTGTTTGGAAAGCTGAGCCTATCGATGGAGGAAAGGATGGAGGAAAAGATGAAGGAAAGGATGGTTCGTTTTCTATCAATCTTGATATTTGA 1383 0.4237 MTSRSGQGSSGSSRTRVGKYELGRTLGEGNFAKVKFARHVESRESVAIKILDKEKVLKHKMIDQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIARSGRLKEDEARKYFQQLICAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIHNKGYDGAKADLWSCGVILFVLMAGYLPFEETNLTALYKKIYKAEFTCPPWFSSSAKKLINRILDPNPATRITFAEVVENDWFKKGYKPPVFEQPTVSLDDDSKNLVVERREEEGHVAPVTMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSKCSADEIISKIEKAAGPLGFDVKKNNCKLKIQGEKTGRKGHLSVATEILEVAPSLYMVELRKSQGDTLEFHKFYKNLATGLKDIVWKAEPIDGGKDGGKDEGKDGSFSINLDI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00668 460 CDD STKc_SnRK3 19 274 - -
Vimu10g00668 460 MobiDBLite consensus disorder prediction 440 454 - -
Vimu10g00668 460 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00668 460 SUPERFAMILY Protein kinase-like (PK-like) 17 290 IPR011009 -
Vimu10g00668 460 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Vimu10g00668 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vimu10g00668 460 Gene3D Transferase(Phosphotransferase) domain 1 100 282 - -
Vimu10g00668 460 Pfam NAF domain 311 371 IPR004041 GO:0007165
Vimu10g00668 460 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00668 460 Gene3D Kinase associated domain 1, KA1 309 434 - -
Vimu10g00668 460 FunFam Non-specific serine/threonine protein kinase 308 434 - -
Vimu10g00668 460 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Vimu10g00668 460 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g00668 460 MobiDBLite consensus disorder prediction 440 460 - -
Vimu10g00668 460 Gene3D Phosphorylase Kinase; domain 1 9 99 - -
Vimu10g00668 460 FunFam Non-specific serine/threonine protein kinase 13 311 - -
Vimu10g00668 460 CDD CIPK_C 315 430 - -
Vimu10g00668 460 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Vimu10g00668 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00668 Vimu-Chr10 5698743 5706907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00668 3 436 CBL-interacting serine-threonine protein kinases AT1G01140 67.937 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vimu10g00668 Pkinase 4.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00668 - - gmx:100788746 817.764